Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00210 ATGGCGGCCGCAGATGTTGAATACAGATGCTTCGTCGGGGGGCTCGCATGGGCCACCGACAGCGAGGCCCTTGAGAAGGCCTTTGCTCCGTATGGCGAGATCGTCGAATCGAAGGTTATTAACGATCGTGAGACTGGTAGGTCAAGAGGGTTCGGATTCGTAACTTTCGCAAATGAGCAGGCCATGAGAGATGCTATTGAGGGGATGAACGGTCAGGATCTTGATGGCCGTAATATTACTGTGAACGAGGCCCAAAATCGTGGCCGAGGTGGATACAACCGTAACGGTGGTGGAGGCTACGGAGGCGGAAACGGTGGTGGTGGCTACGGCGGTGGTGGCTATGGTGGTGGACGTGATCGTGGGTATGGTGATGGTGGAGCTCGCTACTCCAGAGGCGGTGGTGCCTCGGATGGAAGCTGGAGAAACTAG 429 0.5641 MAAADVEYRCFVGGLAWATDSEALEKAFAPYGEIVESKVINDRETGRSRGFGFVTFANEQAMRDAIEGMNGQDLDGRNITVNEAQNRGRGGYNRNGGGGYGGGNGGGGYGGGGYGGGRDRGYGDGGARYSRGGGASDGSWRN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00210 142 Gene3D - 2 110 IPR012677 -
Accr11g00210 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Accr11g00210 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Accr11g00210 142 SMART rrm1_1 9 82 IPR000504 GO:0003723
Accr11g00210 142 MobiDBLite consensus disorder prediction 75 89 - -
Accr11g00210 142 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 5 136 - -
Accr11g00210 142 MobiDBLite consensus disorder prediction 68 142 - -
Accr11g00210 142 SUPERFAMILY RNA-binding domain, RBD 8 117 IPR035979 GO:0003676
Accr11g00210 142 CDD RRM2_NsCP33_like 9 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00210 Accr-Chr11 3004802 3005631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00210 11 67 C2H2 Transcription Factor Family AT2G19380 45.614 1.32e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00210 - K13195 nnu:104595682 161.77