Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00205 ATGGAGTCTCCGACGGTTGGTTTGCTACCGGCTAAACGCCCTGCAGATGGATTTAATTCAGAGAAACACAAAAGATCAAATGTTGTGGACTATAGCAATCCTTATGCAGTTGCAGACTTGATTGATGGCCTGAACCACGGAAAATTTGGTAGTGTCACCAAGGATATAGAGTCCCTTATAGCTCAAAAGATGCAGACATTGAGTCCTATATTTGCAAAAGATCCTGCACTTCTACATTTTGTGAAGTTGGGAATGAATCGCAATGACGAAGCTTCTAAGAAAATCATAGATGTGGAGGATAATATCATGACAAAGATTGCTCCAAAAGCATCATCAACTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATAGGAAACCTTTTCTTCCATTTCAAGAAGTTATTCTGCCAAAACCTGTTGTCTTGTCTGCTACAAACGACATAGTTGTGTACCATGGTCCCAAAGCACATAATCGTCCCACTGAGCGTCATGTTGGAGGTCTACATTTAAAATCTGAACCTTTTCTAGATGGCAAAGACAGAATTGCAGGAGATAAAGGTGCTTTTATTGGTATTCAAGAGGAAGACAATCCAGAGGCTGATTCAAAGGATGACGGGCTTGAAGATATTTGGAGGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGCTGCTATGGATTCTCCACATGATGAAGTTGAAAAGGGTGGGGGCGACTGTGATCACTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTCATTGACAAAGGAATCGAAACCATATTTGAATTCCAGTACAAGGTTAAAAAGAGTACAAGAACTTACGCGGCTGATTCATGGAATGCCAAAGACAGAGCTTTGCCTGAGGTATCAGGGCTTAAATTTGGTGAAGATGGTCTGGTCATAACTGAAATCTCTGCTCACCCTAGGCATTTGAAGCAAATGAAAGCTCATCAAATTGAAGGCTTTAATTTTCTTGTCCGGAACCTTGCGGGTGACAATCCTGGTGGCTGCATCTTGGCCCATGCTCCTGGTTCTGGGAAAACATTCATGATAATTAGTTTCATGCAAAGTTTTCTGGGCAAGTATCCTACTGCTCGACCCCTTGTGGTTCTTCCCAAGGGAATATTGGCCACTTGGAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATTCCACTCCTTGATTTTTACTCTGCTAAGGCTGATGGTCGATCTCAGCAACTTGAAGTTTTAAAACAGTGGGTAGAGCAGAAGAGTATCCTTTTCCTAGGATACAAACAATTCTCTTCAATTGTCTGTGATACTGGTACTGGCCACGCATCAACGTCTTGCCAAAAGATATTACTTGAGGCTCCTTCTATTCTAATCTTAGATGAGGGACACACACCGAGGAATGACAATACTGACATAGTTCAGTCCCTTAACAAAGTGCAAACTCCTCGAAAAGTTGTGCTATCTGGGACGTTATATCAAAATCATGTCAAAGAGGTGTTTAACATTTTAAACATTGTGCGTCCAAATTTTCTCCGTTCACAGACATCTCGACCTATTGTTAGGCGCATTAAGAGTAGAGTACATGTACCAGGTGTGAAGGATTTCTGTGACTTGGTTGAGAACACTTTGCAGAAGGACCCTGACTTCAAAAGGAAAGTGGCTGTCATTCAAGATTTGCGTGAGATGACAAGTCAGGTACTTCATTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTTGTGGATTTTGCAGTTGTACTCAATCTTTCTCCCCGACAGAAGCAAGAAGTCCATAAATTAAAGCACATATCCAGAAAATTTAAGATAAGTTCTGTAGGAAGTGCTGTTTATCTTCACCCTAAATTAAAGCCCTTAGCAGAAAATTGTGTTGAGAATTCTGCTATATCTGATCTTGTGATGGATGAGAAAATAGAGAGTCTAGATATGGATGATGGGGTAAAATCAAAGTTCTTTCTTAAAATTCTGAGCCTATGTGAATCAAGTGGGGAGAAGCTTCTAGTGTTCAGCCAGTATCTCTTGCCTTTGAAGTATTTGGAAAGATTGACCGTGAAAAGGAAGGGGTGGAGTCCAGGGAAAGAGATATTTGTTATATCAGGCGAATCAAGCTCTGAACAAAGAGAATGGGCCATGGAGCAGTTCAACAATTCGCCGAATGCAAAAATATTCTTTGGCTCAATCAAGGCATGTGGAGAAGGCATATCTCTGGTCGGTGCATCACGTATTATCATTCTGGATGTTCATCTAAATCCATCAGTTACACGCCAAGCAATTGGCCGTGCATTCCGACCAGGTCAGACCAAGAAAGTCTATGCATATCGGTTGATAGCTGCTGACTCTCCAGAACAGGAAGACCATGATACTTGTTTCAAGAAGGAATTAATATCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTTTTCGTGATTTTGAAGTGGAGACGGTTGATGTGCAACAATGTGGTGATGTCTTTCTGCAGGGTCCATTGATAAGAGATGATATAAAAGTTCTGCATAAAAGGCCTGGGCACTCTGGTGAGCTCGATGGACGGGGTTAA 2601 0.4121 MESPTVGLLPAKRPADGFNSEKHKRSNVVDYSNPYAVADLIDGLNHGKFGSVTKDIESLIAQKMQTLSPIFAKDPALLHFVKLGMNRNDEASKKIIDVEDNIMTKIAPKASSTVVIIDSDEEDDRDRKPFLPFQEVILPKPVVLSATNDIVVYHGPKAHNRPTERHVGGLHLKSEPFLDGKDRIAGDKGAFIGIQEEDNPEADSKDDGLEDIWREMSMAIECSKDAAMDSPHDEVEKGGGDCDHSFVLKDDLGYVCRVCGVIDKGIETIFEFQYKVKKSTRTYAADSWNAKDRALPEVSGLKFGEDGLVITEISAHPRHLKQMKAHQIEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPTARPLVVLPKGILATWKKEFQTWQVEDIPLLDFYSAKADGRSQQLEVLKQWVEQKSILFLGYKQFSSIVCDTGTGHASTSCQKILLEAPSILILDEGHTPRNDNTDIVQSLNKVQTPRKVVLSGTLYQNHVKEVFNILNIVRPNFLRSQTSRPIVRRIKSRVHVPGVKDFCDLVENTLQKDPDFKRKVAVIQDLREMTSQVLHYYKGDFLDELPGLVDFAVVLNLSPRQKQEVHKLKHISRKFKISSVGSAVYLHPKLKPLAENCVENSAISDLVMDEKIESLDMDDGVKSKFFLKILSLCESSGEKLLVFSQYLLPLKYLERLTVKRKGWSPGKEIFVISGESSSEQREWAMEQFNNSPNAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVYAYRLIAADSPEQEDHDTCFKKELISKMWFEWNEYCGFRDFEVETVDVQQCGDVFLQGPLIRDDIKVLHKRPGHSGELDGRG 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00205 866 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 196 853 IPR044567 GO:0080188
Accr11g00205 866 SMART helicmild6 691 779 IPR001650 -
Accr11g00205 866 SMART ultradead3 319 529 IPR014001 -
Accr11g00205 866 Pfam SNF2-related domain 342 603 IPR000330 GO:0005524|GO:0140658
Accr11g00205 866 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 665 833 IPR001650 -
Accr11g00205 866 Gene3D - 586 830 IPR027417 -
Accr11g00205 866 MobiDBLite consensus disorder prediction 1 21 - -
Accr11g00205 866 CDD SF2_C_SNF 650 790 - -
Accr11g00205 866 Gene3D - 300 536 IPR038718 -
Accr11g00205 866 Pfam Helicase conserved C-terminal domain 667 778 IPR001650 -
Accr11g00205 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 817 IPR027417 -
Accr11g00205 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 523 IPR027417 -
Accr11g00205 866 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 337 516 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00205 Accr-Chr11 2945113 2950243 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00205 676 797 RAD5 or RAD16-like Gene Family AT5G43530 36.066 1.19e-14 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr11g00205 SNF2_N 9.4e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00205 K10875 - gmx:100780454 1197.96