Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00157 ATGGGGAAGAAGAAAGTGAAGGAAAGTGGAGGGAAAGAGCACTGCCCCTCGACTGTGTTTGTCTCAAACTTGCCCTACTCATTCACTAATTCTCAGCTGGAGGAGATGTTTAGCGAAGTTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAGGGGTCATCTCAGCATCGCGGTTTTGGTTATGTTCAATTTGCTGTTGAGGAAGATGCTAACCGTGCGATTGAGTTGAAGAATGGTTCATCTGTAGGAGGCCGTAAAATTGTAGTAAAGCATGCTATGCCTCGTCCTCCCCGCGAAGCACGACAATCAAAGTCAAATCAAGCGGAGAATGCTGATGATATCCCAAAGTCAAAAAATGATGACGATGATGGTGGCTTTTCTGAAGTGAAGAAGCCTTCTTCAGTTATTAAGGAAAAAGTCATAAGTAATGAAAACCATTCAAGGAAGCCTGGTGAAGTGAAAAAAGCAATTCTTTGTAGTGATATAGCAGATGAGGGGGGTTGTTCTGAAAAGCAGAGGGTTGCGAGAACTGTCATATTTGGTGGTCTTATCAATTCAGATATGGCTGAAGTTGTTCACAGCCAAGCAAGGGAGATTGGCAGTGTTTGTTCTATAAAGTACCCCCTTTCTAGGGAAGAATTTGAACAGCATGGTCTCTTCCAAGAGGGATGTAAACTGGATGCTTCAGCTGTACTTTACACGAGTGTGAAATCAGCACGAGCTTCTGTTGTGTCACTTCATCAGAAAGAAATGGGAGGAGGAACTGTTTGGGCACGCCAATTGGGTGGGGAGGGCTCCAAGACACAAAAATGGAAGCTTATTGTAAGGAATCTTCCATTCAAGGCTAAGGAAAATGAAGTAAAAGAGATGTTTTTATCTGCTGGGTTTGTGTGGGATGTATTTATTCCACAGAAGTCTGATACAGGACTGTCTAAGGGTTTTGCTTTTGTAAAATTCACTTGCAAGCAAGATGCAGAAAATGCCATTCAGAAGCTTAATGGATCAAAGTTCGGCAAACGGCTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATATAGCAGTGATACAAATGCTAAGCTTGCTTTAGAAAAGGGACAACATAAGGTGACAGATGAAGATGGTAGTAGTTCTGAGGGCAATTCAGATGATGATGTTGAAGATACAGGGAAACAGGCCCATCAAGAAGATGATACTGATCGAGTTGACTCCAGCTCCTCACAGGAAGAAGAGGTACCATCTGAAGTTAACTTTGATGAGGAAGCTGAGATTGCCAAAAAGGTTCTTAAGAACCTAATCACATCCTCCACCAAAGGAACATCCGTAAATGAGGATTCTATGTCGCCCAAGAAAAAGAAGGAATCAAAATCCAATAAAAATGTTAATGGGGCAGATAAAAAATCATCTAAGGAGTTAGAAAAGGTTACAGATGTTTCTGAGCCTGAAATCTTGGACAGAAGCAAGGCATCTAATCTTAAGCAAACAGAAGAAGATTTGCAGAGAACAGTTTTCATAAGTAATCTTCCCTTTGATTGTGATAATGAAGAAGTGAAACAACGATTCTCTGGATTTGGGGAAGTGGAATACTTTGCTCCAGTTCTCCACCATGTGACCAAACGGCCAAGGGGAACTGGTTTTCTCAAGTTTAAAACTGCTGAGGCTGCTGATGCTGCGGTTTCAACTGCTACTGCTGCTTCTGGCTTGGGCATTCTTCTCAAAGGTAGGCCATTAAAAGTTTTGAGGGCTTTAGATAAGAAGTCGGCTCATGACATGGAACTAAAGAAGGCCAAAAATGACAATCATGACCACCGCAATCTTTACCTGGCAAAGGAAGGACTCATTCTTGAAGGAACTCCAGCTGCTGAAGGGGTTTCAGTCAGTGATATGTTAAAACGCCAGGAGTTGGAGAGAAAAAAGGCAACAAAACTACAATCTCCAAATTTTCATGTTTCAAGAATTAGACTTGTTATTTACAACTTGCCAAAGTCAATGACTGAAAAAGAGCTCAAGAAGCTTTGCTTTGATGCAGTTACCTCCAGAGCCACCAAGCAAAAGCCTCAAATTCGGCAGATAAGGTTCTTGAAGGATGTGAAGAAAGGAAAGGTGGTTACAAAATATCATTCACGTGGAGTTGCTTTTGTTGAATTTTCAGAGCATCAACATGCCCTTGTGGCTCTAAGAGTTCTTAATAATAATCCAGAAACTTTTGGTCCTGAACATCGCCCAATTGTGGAGTTTGCTGTTGATAATGTTCAAACACTTAAACTTCGGAAAACAAAGCTACAGTCTCAGCAGCAGGCCGCTGTTCATGGTGACAACAACGTTGAGGAAAATGAGGAATCAGGTTTCCATACCAATCGAAAGGATAGAAAACAAATAGTACAGGCTGATGACAAACCAGTGAAGGATTCAGTGCTCGATGAAGATGAATCAGCAAGTACATTGCCAAATCAAAATGCCAAAAGGCAGAAAGGCAATTGTAAGGGTAAAAAGGCAGAAGGGTCATCGTCACATAAAGAAGATTCAAAAGCCTTGTCCACGAAGCCAAATAATCACCAAGATGACCAGAATAATGGTGGTAGGACGTCATACACTGTTATTGACTCCCACAAAACAATCAATGGTAAGAAAGTACATCCCGGCTTGAAGAGGAGGACGCAGAATCAGGCCGAAGCTGGGGAAAATGTCCCAAGAAAACGATCAAAAAAGAATAAAGACCCTGTAGGGAAAGACGTGGTAGATAAGCTTGACATGCTTATACAGCAGTATAGATCAAAGTTCTCGCAGCAAGCTTCGCAAGGGAATGATGGAGAGAAAAAACCCTCCAAACAGCTAAGAAAATGGTTTGAACCATAA 2859 0.4183 MGKKKVKESGGKEHCPSTVFVSNLPYSFTNSQLEEMFSEVGPIRRCFMVMQKGSSQHRGFGYVQFAVEEDANRAIELKNGSSVGGRKIVVKHAMPRPPREARQSKSNQAENADDIPKSKNDDDDGGFSEVKKPSSVIKEKVISNENHSRKPGEVKKAILCSDIADEGGCSEKQRVARTVIFGGLINSDMAEVVHSQAREIGSVCSIKYPLSREEFEQHGLFQEGCKLDASAVLYTSVKSARASVVSLHQKEMGGGTVWARQLGGEGSKTQKWKLIVRNLPFKAKENEVKEMFLSAGFVWDVFIPQKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFGKRLIAVDWAVPKKIYSSDTNAKLALEKGQHKVTDEDGSSSEGNSDDDVEDTGKQAHQEDDTDRVDSSSSQEEEVPSEVNFDEEAEIAKKVLKNLITSSTKGTSVNEDSMSPKKKKESKSNKNVNGADKKSSKELEKVTDVSEPEILDRSKASNLKQTEEDLQRTVFISNLPFDCDNEEVKQRFSGFGEVEYFAPVLHHVTKRPRGTGFLKFKTAEAADAAVSTATAASGLGILLKGRPLKVLRALDKKSAHDMELKKAKNDNHDHRNLYLAKEGLILEGTPAAEGVSVSDMLKRQELERKKATKLQSPNFHVSRIRLVIYNLPKSMTEKELKKLCFDAVTSRATKQKPQIRQIRFLKDVKKGKVVTKYHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFAVDNVQTLKLRKTKLQSQQQAAVHGDNNVEENEESGFHTNRKDRKQIVQADDKPVKDSVLDEDESASTLPNQNAKRQKGNCKGKKAEGSSSHKEDSKALSTKPNNHQDDQNNGGRTSYTVIDSHKTINGKKVHPGLKRRTQNQAEAGENVPRKRSKKNKDPVGKDVVDKLDMLIQQYRSKFSQQASQGNDGEKKPSKQLRKWFEP 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00157 952 PANTHER RNA-BINDING MOTIF PROTEIN 14B 14 951 - -
Accr11g00157 952 MobiDBLite consensus disorder prediction 439 480 - -
Accr11g00157 952 Gene3D - 654 748 IPR012677 -
Accr11g00157 952 SMART rrm2_1 273 346 IPR003954 GO:0003676
Accr11g00157 952 SMART rrm2_1 18 91 IPR003954 GO:0003676
Accr11g00157 952 CDD RRM1_RBM28_like 18 96 - -
Accr11g00157 952 MobiDBLite consensus disorder prediction 763 952 - -
Accr11g00157 952 MobiDBLite consensus disorder prediction 86 149 - -
Accr11g00157 952 MobiDBLite consensus disorder prediction 827 849 - -
Accr11g00157 952 CDD RRM3_RBM28_like 502 583 - -
Accr11g00157 952 MobiDBLite consensus disorder prediction 774 810 - -
Accr11g00157 952 MobiDBLite consensus disorder prediction 896 914 - -
Accr11g00157 952 CDD RRM4_RBM28_like 655 751 - -
Accr11g00157 952 SUPERFAMILY RNA-binding domain, RBD 17 258 IPR035979 GO:0003676
Accr11g00157 952 Gene3D - 259 396 IPR012677 -
Accr11g00157 952 Gene3D - 2 131 IPR012677 -
Accr11g00157 952 FunFam RNA-binding motif protein 28 653 748 - -
Accr11g00157 952 MobiDBLite consensus disorder prediction 446 480 - -
Accr11g00157 952 SUPERFAMILY RNA-binding domain, RBD 268 354 IPR035979 GO:0003676
Accr11g00157 952 CDD RRM2_RBM28_like 273 349 - -
Accr11g00157 952 SMART rrm1_1 655 746 IPR000504 GO:0003723
Accr11g00157 952 SMART rrm1_1 273 346 IPR000504 GO:0003723
Accr11g00157 952 SMART rrm1_1 503 581 IPR000504 GO:0003723
Accr11g00157 952 SMART rrm1_1 18 91 IPR000504 GO:0003723
Accr11g00157 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Accr11g00157 952 MobiDBLite consensus disorder prediction 923 939 - -
Accr11g00157 952 SUPERFAMILY RNA-binding domain, RBD 496 588 IPR035979 GO:0003676
Accr11g00157 952 MobiDBLite consensus disorder prediction 850 871 - -
Accr11g00157 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 561 IPR000504 GO:0003723
Accr11g00157 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 343 IPR000504 GO:0003723
Accr11g00157 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Accr11g00157 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 502 585 IPR000504 GO:0003723
Accr11g00157 952 MobiDBLite consensus disorder prediction 112 149 - -
Accr11g00157 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 350 IPR000504 GO:0003723
Accr11g00157 952 MobiDBLite consensus disorder prediction 365 421 - -
Accr11g00157 952 MobiDBLite consensus disorder prediction 385 409 - -
Accr11g00157 952 SUPERFAMILY RNA-binding domain, RBD 646 753 IPR035979 GO:0003676
Accr11g00157 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 654 744 IPR000504 GO:0003723
Accr11g00157 952 FunFam - 2 155 - -
Accr11g00157 952 Gene3D - 434 598 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00157 Accr-Chr11 2077340 2084168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00157 17 97 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 3.90e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00157 K14573 - gmx:100794821 1266.14