Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00156 ATGGCTAAACCAAAGGCTCCCAGAAGAACCCTAGAGTCATACACAGTCAAACACATAAACAAAACCGTTAGAGCTGGCGACTGCGTTCTTATGCGGCCCTCCGAGCCGTCGAAGCCGTCCTACGTGGCTAGGATCGAGCGGATCGAGGCCGACTCTCGAGGCACCAACGTTAAGGTTCACGTCCGTTGGTACTATCGGCCGGAGGAGTCTATCGGTGGCCGTCGCCAGTTCCACGGGTCTAAAGAGGTTTTCCTCTCTGATCACTTTGATGTTCAGAGCGCTGACACGATTGAAGGCAAGTGTACGGTTCATAGTTTCAAGGGCTATACGAAGCTCGATGCTGTCGGAAATGACGATTTCTTCTGCCGTTTCGAATATAATTCCGCTACCGGAGCATTCAATCCAGATAGGGTCGCCGTGTATTGTAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTTCAGTGTGAAGGCTGTAGTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTTGAGGAAGCCAAAAGACTTGATCACTTCTTTTGTGAAAGTTGTTCCGCGGAAGATCAAAATAAGTTGCCAACTTCTCATTCTGCGAGACATTCAGATACAAAGGTGGATACAAAACGCCGTCGAAGGTAA 648 0.4861 MAKPKAPRRTLESYTVKHINKTVRAGDCVLMRPSEPSKPSYVARIERIEADSRGTNVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKGYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEDQNKLPTSHSARHSDTKVDTKRRRR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00156 215 Pfam BAH domain 22 136 IPR001025 GO:0003682
Accr11g00156 215 Pfam PHD-finger 141 189 IPR019787 -
Accr11g00156 215 Gene3D - 2 133 IPR043151 -
Accr11g00156 215 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Accr11g00156 215 MobiDBLite consensus disorder prediction 192 215 - -
Accr11g00156 215 SMART PHD_3 141 188 IPR001965 -
Accr11g00156 215 SUPERFAMILY FYVE/PHD zinc finger 131 192 IPR011011 -
Accr11g00156 215 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Accr11g00156 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 206 IPR013083 -
Accr11g00156 215 FunFam Chromatin remodeling protein EBS 1 133 - -
Accr11g00156 215 SMART BAH_4 21 137 IPR001025 GO:0003682
Accr11g00156 215 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Accr11g00156 215 PANTHER OS08G0421900 PROTEIN 5 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00156 Accr-Chr11 2072663 2076369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00156 31 139 Core DNA Replication Machinery Family AT4G14700 29.358 1.09e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr11g00156 BAH 1.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00156 K25868 - gmx:100787968 427.557