Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00140 ATGGAGGTTGTGGTAGCGAACGCGTTGAAATCGAGTTTGCACAGAGAATTGGCGGGTCTGAAATCGACACAGCAAGCCTTTAGCGAGGAAATTAGGTGCTTCAATTCGAATAACGGTGTTGCCGGTGAGGATTTCTCGGTGGACGACCTATTCGATTTCTCTCAGAGTGAATTTCAACCTGAATATGAGGAAGACGACGAGGAAAAAGACAGTCTCTCCGGTTCCTACTCACATGACAGGAGCGAAGAAGACACCAACTCCAATTCCTCTTCCGGTCTCCGCGATTCTGGCTTCGTTTTTTCTAACGAACTCGCCGTTCCGGACGATGACTTAGAATGGGTTTCTCATTTCGTTGACGACTCTGTCCCGGAGCTCTCTCTTCTGTACCCCGTCCGTTCCGAGGGAACGAAGACCTGGTCTGAACCGGAACCTAGCCCTGGCTTTGCGAAAACTCCTTGTTTTCCCTTTGAATTTCCTGTCAGGGCGAGAAGCACCAAGCGTAGAAGAGCCAGAACGTTCGGCCCTTTGCTTTCCCGGCCATCTTCGCCGCCGTCTTCGTGTTCATCGGTATTTTCCTCGTCGTTGACTCTTATCACCGTCGGCGCGGCTCCAAACACCGCCTTTGCACATGCCGTTACGGAGCCGCCCGTGAAAAAGCAGAAGAAAAGGGCGGAGGCTCAATCCGGTAGTGGTGGTGGGTCCCAGATTCAGCGTCGGTGCACCCATTGCCAAGTGCAGAAGACTCCACAATGGAGAACAGGTCCGCTAGGCCCCAAAACCCTTTGTAACGCTTGTGGAGTCCGGTTCAAGTCCGGTCGTCTTTTTCCGGAGTACAGACCGGCCTGTAGCCCTACTTTCTCTAGCGAAGTTCACTCGAACAGCCATCGTAAAGTGTTAGAGATGAGGAAGAGGAAGGAGATGAGCGAACCGGAATGTGGGTTGACTCAAAGTTCAAACTGTTCCGAGGTGCTGAGCTTCTAG 981 0.5229 MEVVVANALKSSLHRELAGLKSTQQAFSEEIRCFNSNNGVAGEDFSVDDLFDFSQSEFQPEYEEDDEEKDSLSGSYSHDRSEEDTNSNSSSGLRDSGFVFSNELAVPDDDLEWVSHFVDDSVPELSLLYPVRSEGTKTWSEPEPSPGFAKTPCFPFEFPVRARSTKRRRARTFGPLLSRPSSPPSSCSSVFSSSLTLITVGAAPNTAFAHAVTEPPVKKQKKRAEAQSGSGGGSQIQRRCTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSSEVHSNSHRKVLEMRKRKEMSEPECGLTQSSNCSEVLSF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00140 326 CDD ZnF_GATA 239 296 IPR000679 GO:0006355|GO:0043565
Accr11g00140 326 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Accr11g00140 326 FunFam GATA transcription factor 232 316 - -
Accr11g00140 326 MobiDBLite consensus disorder prediction 56 94 - -
Accr11g00140 326 PANTHER GATA TRANSCRIPTION FACTOR 35 307 - -
Accr11g00140 326 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Accr11g00140 326 PIRSF Txn_fac_GATA_plant 15 324 IPR016679 GO:0003677|GO:0005634|GO:0045893
Accr11g00140 326 Gene3D - 233 308 IPR013088 GO:0006355|GO:0008270
Accr11g00140 326 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Accr11g00140 326 MobiDBLite consensus disorder prediction 213 237 - -
Accr11g00140 326 MobiDBLite consensus disorder prediction 71 85 - -
Accr11g00140 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 297 - -
Accr11g00140 326 SMART GATA_3 234 288 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00140 Accr-Chr11 1793152 1794235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00140 8 316 C2C2-Gata Transcription Factor Family AT5G66320 44.000 6.68e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr11g00140 GATA 6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00140 - - qsa:O6P43_011543 339.732