Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00134 ATGACAAACCCTGCCGGGGATCCTCCCTCGCCCTCGCGGTGCTTCCCGCCGCTGACGTCTCCTGCAACCGTCGAAGACATGCCACTCGCCCGGAGAGATGGCGCTGATGAAGCGAAGACCCTCCTACACAGTGACGAAGCGGAAGAGAAACCATCCTATCCTTCTGTTCCACCTGCTTCCAGGGAAGTGTCGGAGGAAATCAATGTAGCTGACATTGCTGTGGAGACTAAGAAGTTTGAGGAGGAGGCATGCGAGGCTGCCATGTCAAATGAAAATGAGGAAGTGGAGAAAGTAGTTATGGGAATGGAGACAGCTGACTCGTATGCAGCTTGCAGATTAGGCAAGACAGCTGAAGCCACTGAGGCATGGAAAGTGGAAGAGGGAAGCCATGTAGCTATAATTGCTGAGGACATTACAAAGGCAGAAGACGAAGCCAATGTAGCTAACACTGTCGAGGACAAGGACATTGCAAAGGTGGAAGAGGAAACTGATGTAGCTAACATTGCTGAGGATAATAAGAAGGTGGAAGAGGAAATTGATGTTGCTAACATGGCTGACGATAATACAAAGGTGGAGGAGGAGACTGATGTAGCTAACATTGTTGAGGATAATAAGAAGGTGGAAGAGGAAGCGGATTTTGCTAACATGGCTGACGATAATACGAAGGTGGATGAGGAAACTAATGTAGTTAACATCGATGAAGACATTACAAAGGTGGGAGAGGACACAAATGTAGCTGACTTTGTTGAAGGGGATGTTGATGAGGCTGCCATGTCAGATGAGAAAGAGGAAGCAGAAAAATTTGTAGCTAGGATGGAGCCAGCTGACACACATGTGGCTTGTTCCCTAGGTGAGACAACTGAACTGTTGGATATCAGGGAGGTGGATGAAGAGGCAGATGAAGATGGCATGCCAGATGAGAATGAGGATGCTGAGAAAGTAGCAGTGGGGATGGAGATGGAAGATGGGTATGTGGCTTCCACCCGTGGTGAGACATCTGAAGTAGATGGAGTTGGCAAGGAGGCTGAAGATAAGGAGGAGGAGGCAGAGGCGTTGAATGTGGTTGGCACAGTGGAAGGTACAACTGACACAGAAGAGGATGCAGATGGAGCTGGTGGAAGGGAGGAGGCCCTAGAGGCAGAAGAGGTGGAGGTAGCCAATGAAGCAGATCTGATGGAAGAGGAAGTAGATGTTGCTGAAGTGGCAGAATATACAGGAGGTGCTGAGTTGACTGAAGAGATGGAGATGGCTGAGGAGCAAGGTAGAAGTGTCAGCAGTGGCAAGAGGAAGCGTGGAAAGAACTCAAAGTCTGTGGGGAGAGTTCCAGTTAGAAAGAAGGTGGAAGAGGATGTTTGTTTCATATGCTTTGATGGGGGTGAGCTTGTCCTTTGTGATCGAAGGGGATGTCCAAAGGCTTACCATCCTACATGTGTTAATCGTGATGATGCTTTCTTTCGAGCAAAGGGTAAATGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGGGAAGAATTCTTACTACATGTGCTATACCTGTACGTTCTCTTTGTGCAAGGGGTGCATCAAAGATGCTGTCATCTTGTGTGTAAGGGGAAAGAATGGCTTTTGCGAGACATGCATGAGGACTGTAATGCTGATTGAACAGAATGAATTAGGGAGCAAGGACAAGGGACAAGTTGATTTTGATGACAAAAGCAGCTGGGAGTATCTCTTCAAGGACTACTACACAGACCTGAAAGGGAAGCTATCTTTGACATATGATGAGCTTGCTCAAGCTAAAAACCCGTGGAAGGGATCTGATATCCATCTTACCAGTCAGGAATCACCTGATGACCTCTATGAGGCTAATAATAATGATGGGGGATCACAATCAGATAGCTCTTCGGAAAATGTAGAAAGAAGTAGTGTTAAAAGAAGAAAGGCCAATAAACGATTGAAGTCTCGTTCCAAGGAGGTGAATTCACATAGCACAAGGACATTGATTGGTGACAAAGGGCCATCTGCAGATGAGAGGTCTGATTGGGCATCAAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGTGACAAATCTATTCTGTCTCAGTTTGATGTGCAGGCTCTTCTGCTAGAGTATATTAAAAGAAACAAGCTCCGTGATCCTCGCCGAAAAAGTCAAATAATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGTCATTTTGAAATGTTAAAGCTTCTTGAATCCCACTTCCTATTAAAAGAAGATTCCCAGACTGAGGATCAACAGGGGAGTGTTGTTGATACTGAAGTTAACCATTTGGAAGGTGATGGCAATATTGATTCCTATCCAAAGACTGGAAAAGACAAGAAACGGAAAACACGAAAAAAAAGTGATGAAAGAGGACTTCAATCCAATATTGATGATTACGCAGCTGTTGATAATCATAATATTAATTTAATTTATCTAAGACGCAATTTGATGGAAGAATTACTTGAAGATACAGATAAGTTTCATGATAAAGTTGTTGGGTCTTTTGTGAGAATAAGGATCTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGAACATGCAAGGCAGCTGAGCCATATAAAGTTGGTAAAAGGATGACAGATACCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCGATTGATATAATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAGCGTCTGCGCCAGAGTATAAAGTGTGGGTTGATAAATCGGCTGACAGTGGGTGACATTCAAGACAAAGCAATGGCACTGCAAGCAGTCAGAGTAAAAGATTGGTTAGAAACAGAGATATTGAGGCTAAGTCACCTCCGTGATAGAGCCAGTGAGAAAGGACGGAGAAAAGAGCTCAGAGAATGTGTAGAGAAGTTGCAGCTTTTAAAAACACCTGAGGAACGTCAGCGAAGATTGGAGGAAATTCCAGAAATACGTGCAGACCCAAACATGGATCCAAGTTATGAGTCTGAGGAGGAAGAAGAAGAAACTGATCCTAAACGATCAGATAGTTACATGAGACCCAGAGGAATGGCATTTGAACGGAGGGGGAGAGAAATGGTTTCTCCTAGAACAGGTGGTTCTATTTCAAATGATTCTTGGAGTGGAGCAAGGAACTATTCTAATAATCGCGAGCTAAGCAGGAATTTGTCTAATAAGGGACTCTCAGTTACATTTGATGACGTGTCTAATGCATCTGAGGGATTGAATGATAGTCAAATCCTCCGGGGGAGAGAGAGGGAAACACAACTATCTAACAGCTGGGAGGGACAAAAATTACATTCAAGCTTAGAGAGTAGTGGCAAAAGTATCCAGCCTGTGGTAGCATCCGAGTCTCTTTCTACTTCTGCGTCCAATGCTTCTGCTGTATCATCAACTGGCATAGCACCGCCTGCTGTGAAAATTAATGAATCAGAAAAGATTTGGCATTATAAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCAATGGCACAGTTACGTAAATGGAATAGCACTGGATATTTTCCTGTTGATTTGAGAATTTGGAGAGCCACTGAGAATCTAGATGAGTCTATACTCTTAAGTAATGCCTTAGCTGGAAACTTTTCTAAGGAGTCATCTGCAGTGGATAAAACTTTTCCGAAGGCTCAGGTGGTGCATAATTTGAATTATGCAGCTTCACACTCCGGGAAGCTTCATTTGCCTGCACAAGGTGTAGATGCTCAAGTTGGAGGAAGATCAACATTTGATCAGAGCAGTGGGTCCTATAATTCACATAATGCTATGGGTTCTCTGGGCCAAACTACTGGAGGAAGTTGGAGATTTGAAGATAATAATTCTGTAGCAAATAGGCCTTCTCCAATTACAGTTGAGATTCCCAAGATCCCTTCTAATGTACGGGGGCCTGACGCTGGTATTACAATTGAATCAGTGAATCTTCCTTCACCTACTCCTCAGACTACCTCTTATGGGGCTAAAGCGCAGGCTTTTGAAAATAAATGGTCACCAACTCCTGTACACCCTGCCGGTTCTCTTGTAGGGAGTCCTTTTCCTGCAGAGAAAGTGGTGCAAAGTGCTGAAAGTGGTTCAGGTTCACAACCAGCTCAGATTCCAGCCCCAAATCCTGGTATTCCTCTTGGTCATCCTCAAGCACCAATGGTAGCTCCTATTACAGCAGATGCCTCGAGAAATATGGGCAACCACAATTCTCATGCTGAAGCTCAAGGTTGGGTATCTGGATTGGTTCAGAAACCAGAAATGGCTGGTCCAGTTCAGATACGAGCGGGTGAACCACAGGCCTGGGGAGGTGTCAATTCAAGGGTAGAATCAAATAATGCTGCTGCTATGCCCCTGCCAACTCATGGCCACTGGGCAGATGCTTCATCTGTCCAGAATGCTGCCTCGTTTAACACTGGAAATCCAATGGGGAATTTACCCATGCCAGGCATTCAAGACTTGAGACCACCAACTTCAAGTAATCAGGGTAACATTCCTGCTGCTTTCCCACCCAACTTGCCTTGGGGCATGACTGCTGCAGAAAATCAAAATGCTAGTTGGGGGGGAATGCCTGGAAATCCAAATCTAAATTGGGGTGGACCTCCAGCTGCCAATATGAACATGAATTGGATGCCTGGCCAGGGTCCAGCACCAGGAAACGCAAATCCAGGATGGGTGGCTCCCAGTCAGGGACCATCTTCAGTAGTCCCTACCGGTTGGGTTCCACCTGGTCAAGGCCATCCTAATGCTAATGGAGGTTGGGTTGTGCCGGGTCAAGGTCCGGCACCTGTTGGTGCTAATCCTGGCTGGGTTGCTCCGGGTGGGGGCCAAGGCATGTGGGGAAATGAACAAAATCATAATGGAGACAGGTTCTCGAACCACAGGGATCGTGGCCCTCATGGTGAATCAGGTTATGGAGGAGATAAAACATGGAACAGACAGTCTTCATTTGGTGGTGGAGGCCGGGGAGGAGGTTCTTCAGGGCCTCCTTTTGCACAGAGAGGAGTGTGCAAGTTCCACGAGAGTGGACACTGCAAGAAAGGAGCTTTTTGTGACTATCTGCACACCTGA 5103 0.4544 MTNPAGDPPSPSRCFPPLTSPATVEDMPLARRDGADEAKTLLHSDEAEEKPSYPSVPPASREVSEEINVADIAVETKKFEEEACEAAMSNENEEVEKVVMGMETADSYAACRLGKTAEATEAWKVEEGSHVAIIAEDITKAEDEANVANTVEDKDIAKVEEETDVANIAEDNKKVEEEIDVANMADDNTKVEEETDVANIVEDNKKVEEEADFANMADDNTKVDEETNVVNIDEDITKVGEDTNVADFVEGDVDEAAMSDEKEEAEKFVARMEPADTHVACSLGETTELLDIREVDEEADEDGMPDENEDAEKVAVGMEMEDGYVASTRGETSEVDGVGKEAEDKEEEAEALNVVGTVEGTTDTEEDADGAGGREEALEAEEVEVANEADLMEEEVDVAEVAEYTGGAELTEEMEMAEEQGRSVSSGKRKRGKNSKSVGRVPVRKKVEEDVCFICFDGGELVLCDRRGCPKAYHPTCVNRDDAFFRAKGKWNCGWHLCSNCGKNSYYMCYTCTFSLCKGCIKDAVILCVRGKNGFCETCMRTVMLIEQNELGSKDKGQVDFDDKSSWEYLFKDYYTDLKGKLSLTYDELAQAKNPWKGSDIHLTSQESPDDLYEANNNDGGSQSDSSSENVERSSVKRRKANKRLKSRSKEVNSHSTRTLIGDKGPSADERSDWASKELLEFVMHMRNGDKSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTEDQQGSVVDTEVNHLEGDGNIDSYPKTGKDKKRKTRKKSDERGLQSNIDDYAAVDNHNINLIYLRRNLMEELLEDTDKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKAMALQAVRVKDWLETEILRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIRADPNMDPSYESEEEEEETDPKRSDSYMRPRGMAFERRGREMVSPRTGGSISNDSWSGARNYSNNRELSRNLSNKGLSVTFDDVSNASEGLNDSQILRGRERETQLSNSWEGQKLHSSLESSGKSIQPVVASESLSTSASNASAVSSTGIAPPAVKINESEKIWHYKDPSGKVQGPFSMAQLRKWNSTGYFPVDLRIWRATENLDESILLSNALAGNFSKESSAVDKTFPKAQVVHNLNYAASHSGKLHLPAQGVDAQVGGRSTFDQSSGSYNSHNAMGSLGQTTGGSWRFEDNNSVANRPSPITVEIPKIPSNVRGPDAGITIESVNLPSPTPQTTSYGAKAQAFENKWSPTPVHPAGSLVGSPFPAEKVVQSAESGSGSQPAQIPAPNPGIPLGHPQAPMVAPITADASRNMGNHNSHAEAQGWVSGLVQKPEMAGPVQIRAGEPQAWGGVNSRVESNNAAAMPLPTHGHWADASSVQNAASFNTGNPMGNLPMPGIQDLRPPTSSNQGNIPAAFPPNLPWGMTAAENQNASWGGMPGNPNLNWGGPPAANMNMNWMPGQGPAPGNANPGWVAPSQGPSSVVPTGWVPPGQGHPNANGGWVVPGQGPAPVGANPGWVAPGGGQGMWGNEQNHNGDRFSNHRDRGPHGESGYGGDKTWNRQSSFGGGGRGGGSSGPPFAQRGVCKFHESGHCKKGAFCDYLHT 1700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00134 1700 Pfam GYF domain 1160 1198 IPR003169 GO:0005515
Accr11g00134 1700 SMART rtf1 810 920 IPR004343 GO:0003677
Accr11g00134 1700 MobiDBLite consensus disorder prediction 1090 1118 - -
Accr11g00134 1700 Gene3D SWIB/MDM2 domain 663 759 IPR036885 -
Accr11g00134 1700 Pfam SWIB/MDM2 domain 676 749 IPR003121 -
Accr11g00134 1700 Coils Coil 375 395 - -
Accr11g00134 1700 MobiDBLite consensus disorder prediction 1632 1647 - -
Accr11g00134 1700 ProSiteProfiles SWIB/MDM2 domain profile. 668 751 IPR003121 -
Accr11g00134 1700 SMART gyf_5 1158 1213 IPR003169 GO:0005515
Accr11g00134 1700 MobiDBLite consensus disorder prediction 1 29 - -
Accr11g00134 1700 Coils Coil 158 185 - -
Accr11g00134 1700 MobiDBLite consensus disorder prediction 609 671 - -
Accr11g00134 1700 FunFam Zinc finger CCCH domain-containing protein 19 811 940 - -
Accr11g00134 1700 SMART swib_2 683 754 IPR019835 -
Accr11g00134 1700 ProSiteProfiles Zinc finger C3H1-type profile. 1675 1700 IPR000571 GO:0046872
Accr11g00134 1700 CDD SWIB-MDM2_like 674 749 - -
Accr11g00134 1700 CDD PHD5_NSD 451 496 - -
Accr11g00134 1700 MobiDBLite consensus disorder prediction 407 439 - -
Accr11g00134 1700 CDD GYF 1157 1212 IPR003169 GO:0005515
Accr11g00134 1700 MobiDBLite consensus disorder prediction 1624 1672 - -
Accr11g00134 1700 MobiDBLite consensus disorder prediction 328 350 - -
Accr11g00134 1700 ProSitePatterns Zinc finger PHD-type signature. 452 512 IPR019786 -
Accr11g00134 1700 MobiDBLite consensus disorder prediction 756 799 - -
Accr11g00134 1700 Coils Coil 190 210 - -
Accr11g00134 1700 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 340 1700 - -
Accr11g00134 1700 FunFam Zinc finger CCCH domain-containing protein 19 442 541 - -
Accr11g00134 1700 Gene3D - 811 940 IPR036128 GO:0003677
Accr11g00134 1700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 543 IPR013083 -
Accr11g00134 1700 MobiDBLite consensus disorder prediction 1104 1118 - -
Accr11g00134 1700 MobiDBLite consensus disorder prediction 985 1058 - -
Accr11g00134 1700 SUPERFAMILY Plus3-like 811 940 IPR036128 GO:0003677
Accr11g00134 1700 ProSiteProfiles Zinc finger PHD-type profile. 449 515 IPR019787 -
Accr11g00134 1700 MobiDBLite consensus disorder prediction 985 1004 - -
Accr11g00134 1700 ProSiteProfiles Plus3 domain profile. 810 943 IPR004343 GO:0003677
Accr11g00134 1700 SUPERFAMILY FYVE/PHD zinc finger 435 497 IPR011011 -
Accr11g00134 1700 Gene3D - 1159 1217 IPR035445 -
Accr11g00134 1700 FunFam Zinc finger CCCH domain-containing protein 19 662 756 - -
Accr11g00134 1700 SUPERFAMILY GYF domain 1147 1210 IPR035445 -
Accr11g00134 1700 MobiDBLite consensus disorder prediction 1017 1039 - -
Accr11g00134 1700 ProSiteProfiles GYF domain profile. 1157 1211 IPR003169 GO:0005515
Accr11g00134 1700 SMART PHD_3 451 497 IPR001965 -
Accr11g00134 1700 SUPERFAMILY SWIB/MDM2 domain 673 750 IPR036885 -
Accr11g00134 1700 MobiDBLite consensus disorder prediction 41 65 - -
Accr11g00134 1700 MobiDBLite consensus disorder prediction 609 630 - -
Accr11g00134 1700 Pfam Plus-3 domain 815 918 IPR004343 GO:0003677
Accr11g00134 1700 MobiDBLite consensus disorder prediction 334 350 - -
Accr11g00134 1700 MobiDBLite consensus disorder prediction 1042 1058 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00134 Accr-Chr11 1635232 1645030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00134 404 520 PHD Transcription Factor Family AT5G58610 27.344 7.90e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Accr11g00134 Plus-3 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00134 - - pcin:129284774 2647.08