Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00133 ATGCCCCCGAAATTGCAATCGGATGCTCGATTTCACCACAGAATGACAAACCCTGCCGGGGATCCTCCCTCGCCCTCGCGGTGCTTCCCGCCGCTGACGTCTCCTGCAACCGTCGAAGACATGCCACTCGCCCGGAGAGATGGCGCTGATGAAGCGAAGACCCTCCTACACAGTGACGAAGCGGAAGAGAAACCATCCTATCCTTCTGTTCCACCTGCTTCCAGGGAAGTGTCGGAGGAAATCAATGTAGCTGACATTGCTGTGGAGACTAAGAAGTTTGAGGAGGAGGCATGCGAGGCTGCCATGTCAAATGAAAATGAGGAAGTGGAGAAAGTAGTTATGGGAATGGAGACAGCTGACTCGTATGCAGCTTGCAGATTAGGCAAGACAGCTGAAGCCACTGAGGCATGGAAAGTGGAAGAGGGAAGCCATGTAGCTATAATTGCTGAGGACATTACAAAGGCAGAAGACGAAGCCAATGTAGCTAACACTGTCGAGGACAAGGACATTGCAAAGGTGGAAGAGGAAACTGATGTAGCTAACATTGCTGAGGATAATAAGAAGGTGGAAGAGGAAATTGATGTTGCTAACATGGCTGACGATAATACAAAGGTGGAGGAGGAGACTGATGTAGCTAACATTGTTGAGGATAATAAGAAGGTGGAAGAGGAAGCGGATTTTGCTAACATGGCTGACGATAATACGAAGGTGGATGAGGAAACTAATGTAGTTAACATCGATGAAGACATTACAAAGGTGGGAGAGGACACAAATGTAGCTGACTTTGTTGAAGGGGATGTTGATGAGGCTGCCATGTCAGATGAGAAAGAGGAAGCAGAAAAATTTGTAGCTAGGATGGAGCCAGCTGACACACATGTGGCTTGTTCCCTAGGTGAGACAACTGAACTGTTGGATATCAGGGAGGTGGATGAAGAGGCAGATGAAGATGGCATGCCAGATGAGAATGAGGATGCTGAGAAAGTAGCAGTGGGGATGGAGATGGAAGATGGGTATGTGGCTTCCACCCGTGGTGAGACATCTGAAGTAGATGGAGTTGGCAAGGAGGCTGAAGATAAGGAGGAGGAGGCAGAGGCGTTGAATGTGGTTGGCACAGTGGAAGGTACAACTGACACAGAAGAGGATGCAGATGGAGCTGGTGGAAGGGAGGAGGCCCTAGAGGCAGAAGAGGTGGAGGTAGCCAATGAAGCAGATCTGATGGAAGAGGAAGTAGATGTTGCTGAAGTGGCAGAATATACAGGAGGTGCTGAGTTGACTGAAGAGATGGAGATGGCTGAGGAGCAAGGTAGAAGTGTCAGCAGTGGCAAGAGGAAGCGTGGAAAGAACTCAAAGTCTGTGGGGAGAGTTCCAGTTAGAAAGAAGGTGGAAGAGGATGTTTGTTTCATATGCTTTGATGGGGGTGAGCTTGTCCTTTGTGATCGAAGGGGATGTCCAAAGGCTTACCATCCTACATGTGTTAATCGTGATGATGCTTTCTTTCGAGCAAAGGGTAAATGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGGGAAGAATTCTTACTACATGTGCTATACCTGTACGTTCTCTTTGTGCAAGGGGTGCATCAAAGATGCTGTCATCTTGTGTGTAAGGGGAAAGAATGGCTTTTGCGAGACATGCATGAGGACTGTAATGCTGATTGAACAGAATGAATTAGGGAGCAAGGACAAGGGACAAGTTGATTTTGATGACAAAAGCAGCTGGGAGTATCTCTTCAAGGACTACTACACAGACCTGAAAGGGAAGCTATCTTTGACATATGATGAGCTTGCTCAAGCTAAAAACCCGTGGAAGGGATCTGATATCCATCTTACCAGTCAGGAATCACCTGATGACCTCTATGAGGCTAATAATAATGATGGGGGATCACAATCAGATAGCTCTTCGGAAAATGTAGAAAGAAGTAGTGTTAAAAGAAGAAAGGCCAATAAACGATTGAAGTCTCGTTCCAAGGAGGTGAATTCACATAGCACAAGGACATTGATTGGTGACAAAGGGCCATCTGCAGATGAGAGGTCTGATTGGGCATCAAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGTGACAAATCTATTCTGTCTCAGTTTGATGTGCAGGCTCTTCTGCTAGAGTATATTAAAAGAAACAAGCTCCGTGATCCTCGCCGAAAAAGTCAAATAATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGTCATTTTGAAATGTTAAAGCTTCTTGAATCCCACTTCCTATTAAAAGAAGATTCCCAGACTGAGGATCAACAGGGGAGTGTTGTTGATACTGAAGTTAACCATTTGGAAGGTGATGGCAATATTGATTCCTATCCAAAGACTGGAAAAGACAAGAAACGGAAAACACGAAAAAAAAGTGATGAAAGAGGACTTCAATCCAATATTGATGATTACGCAGCTGTTGATAATCATAATATTAATTTAATTTATCTAAGACGCAATTTGATGGAAGAATTACTTGAAGATACAGATAAGTTTCATGATAAAGTTGTTGGGTCTTTTGTGAGAATAAGGATCTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGAACATGCAAGGCAGCTGAGCCATATAAAGTTGGTAAAAGGATGACAGATACCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCGATTGATATAATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAGCGTCTGCGCCAGAGTATAAAGTGTGGGTTGATAAATCGGCTGACAGTGGGTGACATTCAAGACAAAGCAATGGCACTGCAAGCAGTCAGAGTAAAAGATTGGTTAGAAACAGAGATATTGAGGCTAAGTCACCTCCGTGATAGAGCCAGTGAGAAAGGACGGAGAAAAGAGCTCAGAGAATGTGTAGAGAAGTTGCAGCTTTTAAAAACACCTGAGGAACGTCAGCGAAGATTGGAGGAAATTCCAGAAATACGTGCAGACCCAAACATGGATCCAAGTTATGAGTCTGAGGAGGAAGAAGAAGAAACTGATCCTAAACGATCAGATAGTTACATGAGACCCAGAGGAATGGCATTTGAACGGAGGGGGAGAGAAATGGTTTCTCCTAGAACAGGTGGTTCTATTTCAAATGATTCTTGGAGTGGAGCAAGGAACTATTCTAATAATCGCGAGCTAAGCAGGAATTTGTCTAATAAGGGACTCTCAGTTACATTTGATGACGTGTCTAATGCATCTGAGGGATTGAATGATAGTCAAATCCTCCGGGGGAGAGAGAGGGAAACACAACTATCTAACAGCTGGGAGGGACAAAAATTACATTCAAGCTTAGAGAGTAGTGGCAAAAGTATCCAGCCTGTGGTAGCATCCGAGTCTCTTTCTACTTCTGCGTCCAATGCTTCTGCTGTATCATCAACTGGCATAGCACCGCCTGCTGTGAAAATTAATGAATCAGAAAAGATTTGGCATTATAAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCAATGGCACAGTTACGTAAATGGAATAGCACTGGATATTTTCCTGTTGATTTGAGAATTTGGAGAGCCACTGAGAATCTAGATGAGTCTATACTCTTAAGTAATGCCTTAGCTGGAAACTTTTCTAAGGAGTCATCTGCAGTGGATAAAACTTTTCCGAAGGCTCAGGTGGTGCATAATTTGAATTATGCAGCTTCACACTCCGGGAAGCTTCATTTGCCTGCACAAGGTGTAGATGCTCAAGTTGGAGGAAGATCAACATTTGATCAGAGCAGTGGGTCCTATAATTCACATAATGCTATGGGTTCTCTGGGCCAAACTACTGGAGGAAGTTGGAGATTTGAAGATAATAATTCTGTAGCAAATAGGCCTTCTCCAATTACAGTTGAGATTCCCAAGATCCCTTCTAATGTACGGGGGCCTGACGCTGGTATTACAATTGAATCAGTGAATCTTCCTTCACCTACTCCTCAGACTACCTCTTATGGGGCTAAAGCGCAGGCTTTTGAAAATAAATGGTCACCAACTCCTGTACACCCTGCCGGTTCTCTTGTAGGGAGTCCTTTTCCTGCAGAGAAAGTGGTGCAAAGTGCTGAAAGTGGTTCAGGTTCACAACCAGCTCAGATTCCAGCCCCAAATCCTGGTATTCCTCTTGGTCATCCTCAAGCACCAATGGTAGCTCCTATTACAGCAGATGCCTCGAGAAATATGGGCAACCACAATTCTCATGCTGAAGCTCAAGGTTGGGTATCTGGATTGGTTCAGAAACCAGAAATGGCTGGTCCAGTTCAGATACGAGCGGGTGAACCACAGGCCTGGGGAGGTGTCAATTCAAGGGTAGAATCAAATAATGCTGCTGCTATGCCCCTGCCAACTCATGGCCACTGGGCAGATGCTTCATCTGTCCAGAATGCTGCCTCGTTTAACACTGGAAATCCAATGGGGAATTTACCCATGCCAGGCATTCAAGACTTGAGACCACCAACTTCAAGTAATCAGGGTAACATTCCTGCTGCTTTCCCACCCAACTTGCCTTGGGGCATGACTGCTGCAGAAAATCAAAATGCTAGTTGGGGGGGAATGCCTGGAAATCCAAATCTAAATTGGGGTGGACCTCCAGCTGCCAATATGAACATGAATTGGATGCCTGGCCAGGGTCCAGCACCAGGAAACGCAAATCCAGGATGGGTGGCTCCCAGTCAGGGACCATCTTCAGTAGTCCCTACCGGTTGGGTTCCACCTGGTCAAGGCCATCCTAATGCTAATGGAGGTTGGGTTGTGCCGGGTCAAGGTCCGGCACCTGTTGGTGCTAATCCTGGCTGGGTTGCTCCGGGTGGGGGCCAAGGCATGTGGGGAAATGAACAAAATCATAATGGAGACAGGTTCTCGAACCACAGGGATCGTGGCCCTCATGGTGAATCAGGTTATGGAGGAGATAAAACATGGAACAGACAGTCTTCATTTGGTGGTGGAGGCCGGGGAGGAGGTTCTTCAGGGCCTCCTTTTGCACAGAGAGGAGTGTGCAAGTTCCACGAGAGTGGACACTGCAAGAAAGGAGCTTTTTGTGACTATCTGCACACCTGA 5145 0.4548 MPPKLQSDARFHHRMTNPAGDPPSPSRCFPPLTSPATVEDMPLARRDGADEAKTLLHSDEAEEKPSYPSVPPASREVSEEINVADIAVETKKFEEEACEAAMSNENEEVEKVVMGMETADSYAACRLGKTAEATEAWKVEEGSHVAIIAEDITKAEDEANVANTVEDKDIAKVEEETDVANIAEDNKKVEEEIDVANMADDNTKVEEETDVANIVEDNKKVEEEADFANMADDNTKVDEETNVVNIDEDITKVGEDTNVADFVEGDVDEAAMSDEKEEAEKFVARMEPADTHVACSLGETTELLDIREVDEEADEDGMPDENEDAEKVAVGMEMEDGYVASTRGETSEVDGVGKEAEDKEEEAEALNVVGTVEGTTDTEEDADGAGGREEALEAEEVEVANEADLMEEEVDVAEVAEYTGGAELTEEMEMAEEQGRSVSSGKRKRGKNSKSVGRVPVRKKVEEDVCFICFDGGELVLCDRRGCPKAYHPTCVNRDDAFFRAKGKWNCGWHLCSNCGKNSYYMCYTCTFSLCKGCIKDAVILCVRGKNGFCETCMRTVMLIEQNELGSKDKGQVDFDDKSSWEYLFKDYYTDLKGKLSLTYDELAQAKNPWKGSDIHLTSQESPDDLYEANNNDGGSQSDSSSENVERSSVKRRKANKRLKSRSKEVNSHSTRTLIGDKGPSADERSDWASKELLEFVMHMRNGDKSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTEDQQGSVVDTEVNHLEGDGNIDSYPKTGKDKKRKTRKKSDERGLQSNIDDYAAVDNHNINLIYLRRNLMEELLEDTDKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKAMALQAVRVKDWLETEILRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIRADPNMDPSYESEEEEEETDPKRSDSYMRPRGMAFERRGREMVSPRTGGSISNDSWSGARNYSNNRELSRNLSNKGLSVTFDDVSNASEGLNDSQILRGRERETQLSNSWEGQKLHSSLESSGKSIQPVVASESLSTSASNASAVSSTGIAPPAVKINESEKIWHYKDPSGKVQGPFSMAQLRKWNSTGYFPVDLRIWRATENLDESILLSNALAGNFSKESSAVDKTFPKAQVVHNLNYAASHSGKLHLPAQGVDAQVGGRSTFDQSSGSYNSHNAMGSLGQTTGGSWRFEDNNSVANRPSPITVEIPKIPSNVRGPDAGITIESVNLPSPTPQTTSYGAKAQAFENKWSPTPVHPAGSLVGSPFPAEKVVQSAESGSGSQPAQIPAPNPGIPLGHPQAPMVAPITADASRNMGNHNSHAEAQGWVSGLVQKPEMAGPVQIRAGEPQAWGGVNSRVESNNAAAMPLPTHGHWADASSVQNAASFNTGNPMGNLPMPGIQDLRPPTSSNQGNIPAAFPPNLPWGMTAAENQNASWGGMPGNPNLNWGGPPAANMNMNWMPGQGPAPGNANPGWVAPSQGPSSVVPTGWVPPGQGHPNANGGWVVPGQGPAPVGANPGWVAPGGGQGMWGNEQNHNGDRFSNHRDRGPHGESGYGGDKTWNRQSSFGGGGRGGGSSGPPFAQRGVCKFHESGHCKKGAFCDYLHT 1714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00133 1714 Gene3D - 825 954 IPR036128 GO:0003677
Accr11g00133 1714 CDD SWIB-MDM2_like 688 763 - -
Accr11g00133 1714 ProSiteProfiles Zinc finger C3H1-type profile. 1689 1714 IPR000571 GO:0046872
Accr11g00133 1714 MobiDBLite consensus disorder prediction 1 79 - -
Accr11g00133 1714 CDD GYF 1171 1226 IPR003169 GO:0005515
Accr11g00133 1714 MobiDBLite consensus disorder prediction 1638 1686 - -
Accr11g00133 1714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 557 IPR013083 -
Accr11g00133 1714 MobiDBLite consensus disorder prediction 623 644 - -
Accr11g00133 1714 FunFam Zinc finger CCCH domain-containing protein 19 676 770 - -
Accr11g00133 1714 SUPERFAMILY Plus3-like 825 954 IPR036128 GO:0003677
Accr11g00133 1714 MobiDBLite consensus disorder prediction 348 364 - -
Accr11g00133 1714 MobiDBLite consensus disorder prediction 1056 1072 - -
Accr11g00133 1714 SUPERFAMILY SWIB/MDM2 domain 687 764 IPR036885 -
Accr11g00133 1714 MobiDBLite consensus disorder prediction 1104 1132 - -
Accr11g00133 1714 ProSiteProfiles SWIB/MDM2 domain profile. 682 765 IPR003121 -
Accr11g00133 1714 MobiDBLite consensus disorder prediction 770 813 - -
Accr11g00133 1714 Coils Coil 389 409 - -
Accr11g00133 1714 Pfam Plus-3 domain 829 932 IPR004343 GO:0003677
Accr11g00133 1714 Coils Coil 172 199 - -
Accr11g00133 1714 ProSitePatterns Zinc finger PHD-type signature. 466 526 IPR019786 -
Accr11g00133 1714 Gene3D SWIB/MDM2 domain 677 773 IPR036885 -
Accr11g00133 1714 MobiDBLite consensus disorder prediction 999 1072 - -
Accr11g00133 1714 MobiDBLite consensus disorder prediction 999 1018 - -
Accr11g00133 1714 MobiDBLite consensus disorder prediction 623 685 - -
Accr11g00133 1714 ProSiteProfiles Zinc finger PHD-type profile. 463 529 IPR019787 -
Accr11g00133 1714 Gene3D - 1173 1231 IPR035445 -
Accr11g00133 1714 MobiDBLite consensus disorder prediction 421 453 - -
Accr11g00133 1714 CDD PHD5_NSD 465 510 - -
Accr11g00133 1714 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 364 1714 - -
Accr11g00133 1714 ProSiteProfiles Plus3 domain profile. 824 957 IPR004343 GO:0003677
Accr11g00133 1714 SMART PHD_3 465 511 IPR001965 -
Accr11g00133 1714 ProSiteProfiles GYF domain profile. 1171 1225 IPR003169 GO:0005515
Accr11g00133 1714 SMART swib_2 697 768 IPR019835 -
Accr11g00133 1714 Pfam SWIB/MDM2 domain 690 763 IPR003121 -
Accr11g00133 1714 Pfam GYF domain 1174 1212 IPR003169 GO:0005515
Accr11g00133 1714 SUPERFAMILY GYF domain 1161 1224 IPR035445 -
Accr11g00133 1714 MobiDBLite consensus disorder prediction 342 364 - -
Accr11g00133 1714 MobiDBLite consensus disorder prediction 43 64 - -
Accr11g00133 1714 SMART gyf_5 1172 1227 IPR003169 GO:0005515
Accr11g00133 1714 SUPERFAMILY FYVE/PHD zinc finger 449 511 IPR011011 -
Accr11g00133 1714 Coils Coil 204 224 - -
Accr11g00133 1714 MobiDBLite consensus disorder prediction 1646 1661 - -
Accr11g00133 1714 MobiDBLite consensus disorder prediction 1031 1053 - -
Accr11g00133 1714 FunFam Zinc finger CCCH domain-containing protein 19 825 954 - -
Accr11g00133 1714 MobiDBLite consensus disorder prediction 1118 1132 - -
Accr11g00133 1714 FunFam Zinc finger CCCH domain-containing protein 19 456 555 - -
Accr11g00133 1714 SMART rtf1 824 934 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00133 Accr-Chr11 1635232 1645072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00133 418 534 PHD Transcription Factor Family AT5G58610 27.344 7.45e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Accr11g00133 Plus-3 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00133 - - pcin:129284774 2647.08