Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00070 ATGGCTGAACGGGTGACTGGGAAGGTGAAGTGGTTCAACGACCAGAAGGGTTTTGGCTTCATAACCCCTGACGATGGTGGCGAGGACCTCTTTGTTCACCAGTCTGCGATCCGTGCTGAGGGATTTCGCAGTCTCGGCGATGGAGAGTCTGTCGAGTTTCTGATCGAATCCGATTCCGATGGCCGTTCCAAGGCTGTCGATGTCACTGGCCCCGCTGAGGCCAATGTTCAAGGGAGCCGACGCGGCGGAGGCGGTCCTGGGGGGAACAGATCTTACGGTGGCGGCCGTGGCGGTGGTTTCGGCGGTGGCTACGGGTCTGGCGGCGGCGGTTTTGGTGGTAGTCGTGGTGGAAGAGGCGGAGGTGGCGGCGGTTATGGTGGTGGGGGTGGTGGTTATGGTGGTGGGGGCAGCGGCGGTGGAGGCTGTTATAACTGTGGTGAGGTTGGTCACCTGGCCAGGGATTGCTACCAGGGAGGAGGCGGCAGCGGCGGTGGCGGAAGGTACGGAGGAGGAGGTGGCGGCGGCGGCGGCGGCGGTGGCTGTTACTCCTGTGGGGAGTCTGGGCATTTTGCCAGGGACTGCCCAACCGGCGCTCGCTGA 600 0.6367 MAERVTGKVKWFNDQKGFGFITPDDGGEDLFVHQSAIRAEGFRSLGDGESVEFLIESDSDGRSKAVDVTGPAEANVQGSRRGGGGPGGNRSYGGGRGGGFGGGYGSGGGGFGGSRGGRGGGGGGYGGGGGGYGGGGSGGGGCYNCGEVGHLARDCYQGGGGSGGGGRYGGGGGGGGGGGGCYSCGESGHFARDCPTGAR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00070 199 SMART c2hcfinal6 180 196 IPR001878 GO:0003676|GO:0008270
Accr11g00070 199 SMART c2hcfinal6 141 157 IPR001878 GO:0003676|GO:0008270
Accr11g00070 199 SUPERFAMILY Nucleic acid-binding proteins 2 69 IPR012340 -
Accr11g00070 199 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Accr11g00070 199 SUPERFAMILY Retrovirus zinc finger-like domains 135 197 IPR036875 GO:0003676|GO:0008270
Accr11g00070 199 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Accr11g00070 199 SMART csp_8 6 71 IPR011129 GO:0003676
Accr11g00070 199 ProSiteProfiles Zinc finger CCHC-type profile. 142 155 IPR001878 GO:0003676|GO:0008270
Accr11g00070 199 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Accr11g00070 199 Pfam Zinc knuckle 180 195 IPR001878 GO:0003676|GO:0008270
Accr11g00070 199 Pfam Zinc knuckle 141 155 IPR001878 GO:0003676|GO:0008270
Accr11g00070 199 ProSiteProfiles Zinc finger CCHC-type profile. 181 195 IPR001878 GO:0003676|GO:0008270
Accr11g00070 199 PANTHER COLD SHOCK DOMAIN PROTEIN 2 111 196 - -
Accr11g00070 199 MobiDBLite consensus disorder prediction 62 94 - -
Accr11g00070 199 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Accr11g00070 199 Gene3D - 1 82 IPR012340 -
Accr11g00070 199 Gene3D - 137 164 - -
Accr11g00070 199 Gene3D - 177 199 - -
Accr11g00070 199 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Accr11g00070 199 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Accr11g00070 199 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00070 Accr-Chr11 918480 919079 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Accr11g00070 CSD 2.2e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00070 - - cave:132187834 167.162