Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00045 ATGGATTTTGATGAATATGAGTACTTAGAGAAGACAGTTGAAAATCCTGAACTTCAGCAGAAGGAGAAAACTAATGGTAGTGATGGAACTGTAAAAGTTGAAGAGAGAGATCATAGTTGGAGCTCAAAGCATAAAGCTACTGAGAAGCTTGATGATGTTGACCGCCATTCCAAGAAATTAAAATCTGGAGATGATCCTCATGGTTATGACAATCACAAAGTAAGAGGGTCATCTCGGCATCGTTCATCATCCAGAGATGGAGACAAGGAGGAGAAGCATAGTAGAGTTAGAGACAGACACCGAGAACATCACCGTGACCGAGAAAGAGGCAAAAGAGACCGGGGAAGTGAGGGTGAAAGAGAAATGGAGAGGGACCACTCACGGCGAAGCAGAAGTATATCTGAAAGAGATAGAGAGAGGAGTCGTGACAGGGACTATAGAGACAGAGAAAGAAGCCGGGACAAGGATTGCAGAGACAGAGAAAGGGGGAGAGAATCAAGGGAGTGGGATAGAGATAGCAGGCGACATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGCTGACCCTGAACGGGATCAGAGGACTGTGTTTGCTTATCAGATTTCTCTGAAGGCAGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCCTGATAATGGACCGCAATTCCCGTCGATCTAAGGGTGTTGGGTATATCGAGTTCTATGATGTCATGTCTGTCCCTATGGCAATAGCACTTTCTAGCCAACCACTTCTTGGCCAACCAGTGATGGTGAAGCCATCAGAAGCGGAAAAGAACTTGGTTCAGTCTACTACATCTGTATCTAGTGAATCCACTGGATTTATGGGCCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGCAATTTGCATTTCAGTATTACTGAAGCTGATATTCGTGTGGTTTTTGAAGCATTCGGTCAGGTTGAGCTGGTCCAGCTGCCTCTCGATGAAACGGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGTACGCCTTGAAGATGCAAGGAATGCCCAGAGCTTAAATGGACAACTGGAAATTGGTGGCAGGACAATAAAGGTATCTGCAGTTCTTGATCAAACTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGGTGGTGGTGGCATGTCCCTAAACGCATGTTCTCGGGCATTACTCATGCAGAAGTTGGATCGTAGTGGCACTGGATCAGGTATTACTGGTTCCCTTGGTAATTCTGCTGCCAATAACACAGGCCTTAATCTACCAGCTACAGAACATGCGGGAGCTGCCTCTGTGGGTTCTCTACTGGTTTCTCCGATTGCTTCAGGTCCTTCGGCAGCTGGGTTTCCAGGTGGAAGTCTACAAATTCCCACTGCTGCTGCTACATTTCCTACTATTGATACTATTGGTGCTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCTAAAGATGAGAAGGAACCAGACTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGAACATTAACACATGTATATATCGACAAGAACACTGCTGGCTTTGTCTACTTACGATTTGAAAATACTCAAGCTGCTATAAATGCACAGCGGTCTCTGCATGGGAGGTGGTTTGCTGGGAAGATGATCACTGCTAGCTTCATGGTGCCTCAGTTATATGAGGATAAGTTCAAAGACAGCAGATAG 1755 0.4484 MDFDEYEYLEKTVENPELQQKEKTNGSDGTVKVEERDHSWSSKHKATEKLDDVDRHSKKLKSGDDPHGYDNHKVRGSSRHRSSSRDGDKEEKHSRVRDRHREHHRDRERGKRDRGSEGEREMERDHSRRSRSISERDRERSRDRDYRDRERSRDKDCRDRERGRESREWDRDSRRHKEKKEEAAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSSQPLLGQPVMVKPSEAEKNLVQSTTSVSSESTGFMGPYSGGARRLYVGNLHFSITEADIRVVFEAFGQVELVQLPLDETGHCKGFGFVQFVRLEDARNAQSLNGQLEIGGRTIKVSAVLDQTGMQEVGGNTGDFDDDGGGGMSLNACSRALLMQKLDRSGTGSGITGSLGNSAANNTGLNLPATEHAGAASVGSLLVSPIASGPSAAGFPGGSLQIPTAAATFPTIDTIGAPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGTLTHVYIDKNTAGFVYLRFENTQAAINAQRSLHGRWFAGKMITASFMVPQLYEDKFKDSR 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00045 584 Gene3D - 486 584 IPR012677 -
Accr11g00045 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 376 IPR000504 GO:0003723
Accr11g00045 584 SUPERFAMILY RNA-binding domain, RBD 487 570 IPR035979 GO:0003676
Accr11g00045 584 SMART rrm2_1 300 372 IPR003954 GO:0003676
Accr11g00045 584 SMART rrm2_1 491 569 IPR003954 GO:0003676
Accr11g00045 584 SMART rrm1_1 300 372 IPR000504 GO:0003723
Accr11g00045 584 SMART rrm1_1 196 268 IPR000504 GO:0003723
Accr11g00045 584 SMART rrm1_1 491 569 IPR000504 GO:0003723
Accr11g00045 584 MobiDBLite consensus disorder prediction 27 194 - -
Accr11g00045 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 514 566 IPR000504 GO:0003723
Accr11g00045 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 370 IPR000504 GO:0003723
Accr11g00045 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 262 IPR000504 GO:0003723
Accr11g00045 584 MobiDBLite consensus disorder prediction 1 194 - -
Accr11g00045 584 FunFam RNA-binding protein 39 isoform X1 188 280 - -
Accr11g00045 584 Gene3D - 123 278 IPR012677 -
Accr11g00045 584 FunFam Splicing factor, CC1-like protein 485 584 - -
Accr11g00045 584 CDD RRM1_RBM39_like 196 268 - -
Accr11g00045 584 SUPERFAMILY RNA-binding domain, RBD 297 397 IPR035979 GO:0003676
Accr11g00045 584 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 391 508 IPR029123 -
Accr11g00045 584 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 582 IPR006509 GO:0003723|GO:0005634|GO:0006397
Accr11g00045 584 FunFam CC1-like, splicing factor 294 402 - -
Accr11g00045 584 NCBIfam splicing factor, CC1-like family 73 582 IPR006509 GO:0003723|GO:0005634|GO:0006397
Accr11g00045 584 Gene3D - 286 401 IPR012677 -
Accr11g00045 584 MobiDBLite consensus disorder prediction 1 18 - -
Accr11g00045 584 CDD RRM3_RBM39_like 489 571 - -
Accr11g00045 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 490 573 IPR000504 GO:0003723
Accr11g00045 584 SUPERFAMILY RNA-binding domain, RBD 188 285 IPR035979 GO:0003676
Accr11g00045 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 272 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00045 Accr-Chr11 664483 671605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00045 196 362 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 7.62e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00045 K13091 - gmx:100789839 725.317