Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00027 ATGGACTCCCTCAGAAAATCTTTCAAGTCCTATTATTCTTACAAACACCCCAGAAAGATCTCTGCTGGCACAGACGCCGACTCCGGCCACGAACAGCTTCCCATTCTCCTGGATCAAGAAACTCCCTACGATCATCCTCCTCCTCACCTCACTTCTCCCTCATCCATGACCTCCACTACTTCCCCGAATCGCCGAGAGGTTGTCGTTAAAATAGACGAAGGTGATTCCAGAGGTCCCGCAGTGCAACAGGGTGACAAGATTTGGAGAGAAACTAGCTATGACTTCTGGAACAATGGAGACTTGAGCAAGAGTGTCAGTGACGGGAGTGCTGCCGCTATTACTAGTGGTAATGACGAGGATAGCTTTGATTTCCGGCATCAAGGGCCGGGTTCCCAGGATCCACCCTCTGTGCTCATTGGTAAATTCTTGCACAAACAGAAAGCGTCTGGTGACCTGTCGCTGGATATGGATTTAGAAATGGAGGAGTTCGAGCAAGACTACAAATTGCCTCCGGTGGAAGAGTCTCCGCATCTCAATAGCATTTCCAAGGACCTCAAAGTCTCGTTCGAGGAACCCGCTTCCAATGTTGTTGAACCGGCAAGTGATACCGTTAGACGAAGGTACAGGGAGTCGCCGGGTAACAGCGAAGTTCATAAATCGCCGCAAAGCGATCAGCGTGGATCGCCGGCTGTTGATCAAAGTGGTAATGCTGGTGCGGGGGATGGCGAGGTGGTAAGATGCACCTCCAACGCATCGGTTGAAAGGAATCTTTCGTTGCAGAGGAAATCTGCCTTGCTGAAGGCCAGAAATAAGTCGAGATTGTTGGACCCGCCGGAGGAGACGAATCGAAAGTCTGGTCGGGTGGCAAAATCAGGGCAAATGCTTTCGGGGATGTTAGGGAAGAAAGTGGAGGAGGAGGACGACGACCCATTTTTGGAGGAAGACGTGCCGGATGAGTTGAAAAAAACCCATTTTAGCATATGGATTCTGCTGGAGTGGTTGAGTTTGATTTTGTTCCTTGCTGCGCTTGCATGCACGCTGGGTATCCCAGTTTTGAGGAATAAGATTCTCTGGAAGCTCCATTTATGGAAATGGGAGGTGATGATCCTGGTTCTAATATGTGGTCGGTTGGTTTCTGATTGGGTAATCCGAATTTTGGTGTTCTTTATCGAAAGAAATTTCCTTTTGCGGAAGAGAGTCCTTTATTTTGTGTACGGTGTGAGGAAGGCAGTTCAAAATTGTCTATGGTTGGGATTTGTTTTGATTGCTTGGCATCTCTTGTTCGATAAGAAGGTTGAGAGGGAGACTAGAGGCAACGCCCTTCAATATGTCACCAAGGTCTTGGTCTGTTTCTTGGTGGGTACTTTGGTGTGGTTGGCAAAAACTCTCGCGGTTAAGGTTATGGCTTCTTCCTTCTATACAAGCACCTACTTTGATAGGATTCAGGAGTCACTGTTTAATCAGTTTGTGATTGAAACACTGTCTGGGCCACCTCTGATAGAAATTCAGAAGTCAGAGGAAGAGGAACAAAAACTTGCTGATGAGGTTCAGAAACTGCAGAATGCTGGGGTTAACATCCCCCCTGAGCTTAGGGCAGCTGCCTTCTCCACAACCAAGAGTCCAAGGGCAGCTGCCTTATCCAAAACTAAGAGTCCAAGGACAATGAAAAGCGGAATGCTCCAGAAAAGCCCTCGTCTTATAAGTGGAAAGTTTTCTCGTCCGCTCTCCCATAAATCGGATGATGGGATTACTATTGATCACCTGCATAAGCTGAATCCAAAAAATGTCTCTGCCTGGAATATGAAAAGGTTAATGAATATGGTCCGGCATGGCACTCTTTCTACACTGGATGAGCAGATACTTGATTCAACTGAAGATGATGAAAATGCCACTCAGATTAGAAGTGAAAAAGAAGCAAAAGCCGCGGCAAAGAAAATATTTCAGAATGTTGCCAGGCGGGGTTGCAGGTTCATTTACCTGGAGGATTTGCTGCGATTTATGCAGGAAGATGAAGCTGAGAAAACCATGGATCTCTTCGAAGGAGCGTCTGAGTCTGGGAAGATCAGCAAATCTGCCCTGAAGAACTGGGTGGTTAATGCCTTCAGAGAGAGGAGAGCACTTGCTTTGACATTGACTGATACCAAAACTGCAGTGAACCAACTTCATCGAATACTCAATTTTATAGTTGGCATCATTATACTAGTTATTTGGCTACTAATACTGGGAATTGCCACCACCAAATTTCTTCTCTTTGTGAGCTCACAGCTTGTTTTGGTTGCGTTTATATTTGGAAATACCTGCAAGACGGTATTTGAAGCAATTATTTTCTTATTTATCATGCACCCATTTGATGTGGGGGATAGGTGTGAAATCGATGGGATTCAGATGGTTGTGGAAGAGATGAATATACTGACAACCACTTTTTTAAGATATGACAATCTAAAAATAATCGTCCCTAACAGCGTCCTTGCCACCAAGGCCATACAAAATTACTACCGGAGTCCTGACATGGGAGATGCTATTGATTTCTTTATACACGTGTCTACCCCAGCTGAAAAGATTGCACTGATGAAACAAAGAATACACAGCTTCATCGATAACAAGGAGGAGCACTGGTATCCTGCATCTTTTATGGTCTTTAGGGAGCTGGAGCAATTAAACATGATTAGGATATCGATTTGGCCAACTCACAAAATGAACTTCCAAGACATGGGAGAAAGGTTTGTCAGACGATCCCTTCTGATCGAAGAGCTGCTCAGGATATTCCGGGAGATCGACATCCAGTACCGTCTTCTTCCTCTTGATATTAACGTCAGAGGCATGCCTACCACTTCAGAACGGCTTCCACCTAGTTGGGCCAATATCATAAGTTGA 2874 0.4558 MDSLRKSFKSYYSYKHPRKISAGTDADSGHEQLPILLDQETPYDHPPPHLTSPSSMTSTTSPNRREVVVKIDEGDSRGPAVQQGDKIWRETSYDFWNNGDLSKSVSDGSAAAITSGNDEDSFDFRHQGPGSQDPPSVLIGKFLHKQKASGDLSLDMDLEMEEFEQDYKLPPVEESPHLNSISKDLKVSFEEPASNVVEPASDTVRRRYRESPGNSEVHKSPQSDQRGSPAVDQSGNAGAGDGEVVRCTSNASVERNLSLQRKSALLKARNKSRLLDPPEETNRKSGRVAKSGQMLSGMLGKKVEEEDDDPFLEEDVPDELKKTHFSIWILLEWLSLILFLAALACTLGIPVLRNKILWKLHLWKWEVMILVLICGRLVSDWVIRILVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGFVLIAWHLLFDKKVERETRGNALQYVTKVLVCFLVGTLVWLAKTLAVKVMASSFYTSTYFDRIQESLFNQFVIETLSGPPLIEIQKSEEEEQKLADEVQKLQNAGVNIPPELRAAAFSTTKSPRAAALSKTKSPRTMKSGMLQKSPRLISGKFSRPLSHKSDDGITIDHLHKLNPKNVSAWNMKRLMNMVRHGTLSTLDEQILDSTEDDENATQIRSEKEAKAAAKKIFQNVARRGCRFIYLEDLLRFMQEDEAEKTMDLFEGASESGKISKSALKNWVVNAFRERRALALTLTDTKTAVNQLHRILNFIVGIIILVIWLLILGIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFIMHPFDVGDRCEIDGIQMVVEEMNILTTTFLRYDNLKIIVPNSVLATKAIQNYYRSPDMGDAIDFFIHVSTPAEKIALMKQRIHSFIDNKEEHWYPASFMVFRELEQLNMIRISIWPTHKMNFQDMGERFVRRSLLIEELLRIFREIDIQYRLLPLDINVRGMPTTSERLPPSWANIIS 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00027 957 SUPERFAMILY Sm-like ribonucleoproteins 772 831 IPR010920 -
Accr11g00027 957 PIRSF Memb_At2g17000 41 955 IPR016688 -
Accr11g00027 957 MobiDBLite consensus disorder prediction 193 243 - -
Accr11g00027 957 MobiDBLite consensus disorder prediction 270 289 - -
Accr11g00027 957 MobiDBLite consensus disorder prediction 215 232 - -
Accr11g00027 957 MobiDBLite consensus disorder prediction 19 63 - -
Accr11g00027 957 Pfam Mechanosensitive ion channel 723 926 IPR006685 GO:0016020|GO:0055085
Accr11g00027 957 Coils Coil 502 522 - -
Accr11g00027 957 MobiDBLite consensus disorder prediction 106 137 - -
Accr11g00027 957 FunFam Predicted mechanosensitive ion channel 782 831 - -
Accr11g00027 957 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 48 952 IPR016688 -
Accr11g00027 957 MobiDBLite consensus disorder prediction 272 286 - -
Accr11g00027 957 Gene3D - 782 831 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00027 Accr-Chr11 474430 478382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00027 61 953 Mechanosensitive Ion Channel Family AT1G78610 57.127 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00027 K22048 - gmx:102665658 1231.47