Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00018 ATGATGAGCATGACATCACGGGAAGGAGAAATGGAACTGCCAGGCTTCCGATTCCACCCCACCGAAGAAGAACTCCTCGATTTCTACCTCAAGAACAGCATCCTCGGAAACAAGCTCCGCTTCGACATCATCGGTTTCCTCAACATCTATCACCACGATCCCTGGGAATTGCCTGGCCTTGCCAAGGTGGGAGAGAGAGAGTGGTACTTCTTCGTGCCGAGGGACAAGAAGCAGGGGAGCGGCGGAAGGCCCAACCGCACCACCCAGAAAGGCTTCTGGAAGGCCACCGGTTCAGACCGAAAAATCATAAGCCTGTCGGAGCCGAAGCGCCTGATCGGGCTGAGGAAGACCCTGGTGTTCTACCGAGGGCGAGCCCCCCGGGGGTGCAAGACCGACTGGGTCATGAACGAGTACCGCCTCCCAGACTCGTGCCACCTCCCCAAAGACGTTGTGCTCTGCAAGATTTACAGAAAGGCCACCTCCTTGAAGGTCCTGGAGCAGAGGGCCGCCCTTGAAGAAGAGTCCAAGCAGCTCCCTCTCGCTAACGTGTCCCCCTGCAGCTCCAGCGACACCCCCTCCCTCCTTCTCAAGCAAGAATCCCCTGACCACGATCACGATCACTACCACTTGTTTGACCACAAAGCCTCTTCCCTCCCAAACAGCAAAGACAAATTTGGCGACCTCCATCTTCCCATTATTTCCATGGACTCCACCCAAGACCCCTTCTGGACTCAATTTAACAACACTCCTTGCCCCTCCCTCTTTAACTTCTAA 774 0.5568 MMSMTSREGEMELPGFRFHPTEEELLDFYLKNSILGNKLRFDIIGFLNIYHHDPWELPGLAKVGEREWYFFVPRDKKQGSGGRPNRTTQKGFWKATGSDRKIISLSEPKRLIGLRKTLVFYRGRAPRGCKTDWVMNEYRLPDSCHLPKDVVLCKIYRKATSLKVLEQRAALEEESKQLPLANVSPCSSSDTPSLLLKQESPDHDHDHYHLFDHKASSLPNSKDKFGDLHLPIISMDSTQDPFWTQFNNTPCPSLFNF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00018 257 ProSiteProfiles NAC domain profile. 12 158 IPR003441 GO:0003677|GO:0006355
Accr11g00018 257 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 204 - -
Accr11g00018 257 Gene3D NAC domain 21 163 IPR036093 GO:0003677|GO:0006355
Accr11g00018 257 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Accr11g00018 257 FunFam NAC domain-containing protein 67-like 21 162 - -
Accr11g00018 257 Pfam No apical meristem (NAM) protein 14 140 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00018 Accr-Chr11 386145 387037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00018 10 200 NAC Transcription Factor Family AT2G17040 72.775 5.70e-103 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr11g00018 NAM 6.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00018 - - gmx:100816770 349.362