Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00004 ATGGGCAACTCATGCCGTGGATCTTTGAAAGGGAAACATTTTCAGGGCTTCAGCCAGCCCGAAGACCAATCCACTGCTCATTCCAAGCGCAACATTTCGTCTGATTGCTCCAACTCAGATTATTACGCCTCCAGCTTGAACTCCCAGAAGCCCGTAGCCAAAGAAAACCCAAACAAAGATATTACTAACGACTCTTGTACAGATCAATACAGCAATAACAGTAATCTACCCTTCCTTATTCCATCCAAGAAAGACGCCATCATGAGGCGGGGGGTTGATAACCAAGCATATTATGTATTGGGTCATAAGACGCCCAATATCCGTGATCTTTATACTCTAGGCCGTAAATTGGGGCAGGGGCAGTTTGGCACCACTTATTTATGCACTGAGAATTCCACTGGCACTGAATATGCATGTAAGTCCATCTCTAAGAGGAAGTTGATCTCTAAGGAAGATGTTGAGGATGTTAGGAGGGAAATTCAGATAATGCACCATTTAGCCGGTCACAAGAATATTGTTACAATAAAGGGTGCTTACGAGGATCCATTGTATGTTCATATTGTCATGGAGCTCTGCTCTGGGGGAGAGTTGTTTGACCGCATTATCCAGAGGGGCCACTACAGCGAAAGAAAGGCTGCAGAATTGACCAAAATTATTGTTGGTGTTGTTGAGGCATGTCATTCCCTTGGGGTTATGCATAGAGATCTCAAGCCTGAAAACTTTTTATTGGTCAACAAAGATGATGATTTCTCTCTTAAAGCTATAGACTTTGGGCTTTCTGTGTTCTTCAAACCAGGTCAAATTTTCACTGACGTAGTTGGTAGTCCATATTATGTTGCTCCTGAGGTTCTTCTCAAGCATTATGGTCGAGAAGCAGATGTATGGACAGCGGGTGTCATACTGTACATATTGCTTAGTGGTGTGCCACCATTTTGGGCAGAAACCCAGCAGGGTATATTTGATGCGGTGTTGAAGGGACACATAGATTTTGAATCAGATCCATGGCCTCTAATATCTGATAGTGCAAAAGATTTGATCCGGAAGATGCTATGTTCTCAACCTTCAGAACGGCTAACTGCCCATGAAGTGTTATGTCATCCCTGGATATGTGAAAATGGAGTTGCCCCTGATAGGGCACTGGATCCTGCTGTCCTTTCTCGTCTCAAACAGTTCTCTGCGATGAATAAGTTAAAGAAAATGGCTTTGCGGGTAATTGCTGAAAGTCTATCCGAAGAGGAGATTGCAGGTCTAAAAGAAATGTTCAAGGCCATGGATACTGATAACAGTGGTGCAATCACTTTTGATGAACTCAAGGCTGGTTTGAGAAGATATGGATCAACCCTTAAGGATACAGAAATTCGTGATCTTATGGAAGCAGCTGATGTAGACAACAGTGGAACTATAGACTATGGAGAGTTTGTTGCGGCAACGGTTCATCTAAACAAATTAGAGCGTGAGGAGCATCTAATTGCAGCCTTCCAATATTTTGACAAGGATGGAAGTGGTTATATTACTGTTGATGAGCTTCAACAAGCTTGTATTGAACATAACATGACTGATGTTTTTCTTGAAGATATTATTAAGGAAGTGGATCAAGATAATGATGGAAGCATTGATTATGGTGAATTTGTTGCCATGATGCGAAAAGGCAATGCTGGAGTTGGAAGGAGGACTATGCGCAACAGTCTCAATTTGAGCATGAGAGATGCGCCAGGAAGCTTGATGTCGGATTATTGCTAA 1740 0.4253 MGNSCRGSLKGKHFQGFSQPEDQSTAHSKRNISSDCSNSDYYASSLNSQKPVAKENPNKDITNDSCTDQYSNNSNLPFLIPSKKDAIMRRGVDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTENSTGTEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYSERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQIFTDVVGSPYYVAPEVLLKHYGREADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFESDPWPLISDSAKDLIRKMLCSQPSERLTAHEVLCHPWICENGVAPDRALDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLKEMFKAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYGEFVAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACIEHNMTDVFLEDIIKEVDQDNDGSIDYGEFVAMMRKGNAGVGRRTMRNSLNLSMRDAPGSLMSDYC 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00004 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Accr11g00004 579 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Accr11g00004 579 FunFam Calcium-dependent protein kinase 1 377 551 - -
Accr11g00004 579 CDD STKc_CAMK 111 368 - -
Accr11g00004 579 PANTHER SERINE/THREONINE-PROTEIN KINASE 103 543 - -
Accr11g00004 579 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Accr11g00004 579 MobiDBLite consensus disorder prediction 1 68 - -
Accr11g00004 579 ProSitePatterns EF-hand calcium-binding domain. 497 509 IPR018247 -
Accr11g00004 579 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Accr11g00004 579 ProSiteProfiles Protein kinase domain profile. 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr11g00004 579 Gene3D - 379 551 - -
Accr11g00004 579 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Accr11g00004 579 SMART efh_1 488 516 IPR002048 GO:0005509
Accr11g00004 579 SMART efh_1 522 550 IPR002048 GO:0005509
Accr11g00004 579 SMART efh_1 452 480 IPR002048 GO:0005509
Accr11g00004 579 SMART efh_1 416 444 IPR002048 GO:0005509
Accr11g00004 579 Pfam Protein kinase domain 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr11g00004 579 ProSiteProfiles EF-hand calcium-binding domain profile. 523 553 IPR002048 GO:0005509
Accr11g00004 579 SMART serkin_6 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr11g00004 579 Gene3D Phosphorylase Kinase; domain 1 113 196 - -
Accr11g00004 579 FunFam Calcium-dependent protein kinase 5 197 377 - -
Accr11g00004 579 Pfam EF-hand domain pair 487 548 IPR002048 GO:0005509
Accr11g00004 579 Pfam EF-hand domain pair 417 477 IPR002048 GO:0005509
Accr11g00004 579 ProSiteProfiles EF-hand calcium-binding domain profile. 484 519 IPR002048 GO:0005509
Accr11g00004 579 MobiDBLite consensus disorder prediction 17 68 - -
Accr11g00004 579 ProSitePatterns EF-hand calcium-binding domain. 531 543 IPR018247 -
Accr11g00004 579 SUPERFAMILY EF-hand 409 549 IPR011992 -
Accr11g00004 579 Gene3D Transferase(Phosphotransferase) domain 1 197 378 - -
Accr11g00004 579 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Accr11g00004 579 SUPERFAMILY Protein kinase-like (PK-like) 92 393 IPR011009 -
Accr11g00004 579 FunFam Calcium-dependent protein kinase 1 113 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00004 Accr-Chr11 74678 82549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00004 1 570 EF-hand Containing Proteins AT2G17290 82.487 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Accr11g00004 Pkinase 2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00004 K13412 - qsa:O6P43_002195 1044.65