Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g00001 ATGGGGATTTGCTGGGGTTCTCCAGCTAACAACCCAAGCACCACCAGCGCATCCGATCACCTTAGTGCAGCTACAACGGGAACATCCCGAACTACCAGCAATACTACTACTGCTACTACATCTTATGGGAGTGGAAGCATCAGCCAGTTTTCCGAGTCCAGTGGTGGTGACGTTTATCCAAATGGGCAGATTTTGCCTTCTGCAAATTTAAGGATATTCACTTTTGCGGAGTTGAAGGCTGCGACTAAGAATTTTAGAGTTGATACAGTACTTGGAGAGGGAGGTTTTGGAAAGGTCTTCAAGGGTTGGCTCGAAGAAAAGGCAACGCCAAAAAATGGAAGTGGAACTGTCGTTGCAGTTAAAAAATTGAACTCAGAGAGTTTACAAGGATTTGAGGAATGGCAGTCAGAGATAAATTTTCTGGGACGGCTTTCTCATCCTAACCTTGTTAAGCTGTTAGGGTACTGTTGGGAAGAAAATGAGCTTCTTCTCGTCTATGAATTCATGCAAAAGGGCAGTTTGGAAAATCACCTCTTTGGAAGGGGTTCTGCTGTTCAACCACTTCCATGGGACATTAGGCTTAAGATTGCAATTGGAGCAGCTCGTGGTTTGGCATTCCTGCACACATCTGAGAAAGTAATTTACCGTGATTTCAAGGCCTCCAATATATTGCTCGATGGGTCTTACAATGCAAAGATTTCAGACTTTGGCTTGGCAAAATTGGCACCTTCAGCTAGTCGGTCCCATGTAACAACAAGGGTGATGGGCACGTTTGGCTATGCGGCTCCTGAGTATGTGGCAACAGGGCATCTGTACGTGAAGAGTGATGTGTATGGATTTGGAGTTGTTTTGGTTGAGATGCTGACAGCCCTTCGGGCGCTAGATCAAAACCGCCCCAGCGGCCAACATAATCTTGTGGACTGGGTAAAACCATACTTACAAGATGGAAGAAAATTGAAGAGCATAATGGATTCACGGTTGGAGGGGAAATATCCATCCAAATCTGCATTTCGTATAGCTCAACTTGCTTTAAAATGTCTTGCGTTAGAGCCCAAACACCGGCCATCGATGAAGGAAGTTTTGGAGAACTTGGAGAGGATTCAAGCTACGAATGATAGGCCTGTGGAGTCCAGACACCGTTCTAATCGTAACGTGGCCCCCCATCATGTTTCCCGACCTCTGCGCCCTCGATCTCATTGA 1200 0.46 MGICWGSPANNPSTTSASDHLSAATTGTSRTTSNTTTATTSYGSGSISQFSESSGGDVYPNGQILPSANLRIFTFAELKAATKNFRVDTVLGEGGFGKVFKGWLEEKATPKNGSGTVVAVKKLNSESLQGFEEWQSEINFLGRLSHPNLVKLLGYCWEENELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLAPSASRSHVTTRVMGTFGYAAPEYVATGHLYVKSDVYGFGVVLVEMLTALRALDQNRPSGQHNLVDWVKPYLQDGRKLKSIMDSRLEGKYPSKSAFRIAQLALKCLALEPKHRPSMKEVLENLERIQATNDRPVESRHRSNRNVAPHHVSRPLRPRSH 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g00001 399 ProSitePatterns Protein kinases ATP-binding region signature. 91 122 IPR017441 GO:0005524
Accr11g00001 399 MobiDBLite consensus disorder prediction 384 399 - -
Accr11g00001 399 ProSiteProfiles Protein kinase domain profile. 85 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr11g00001 399 MobiDBLite consensus disorder prediction 1 46 - -
Accr11g00001 399 MobiDBLite consensus disorder prediction 370 399 - -
Accr11g00001 399 CDD STKc_IRAK 91 367 - -
Accr11g00001 399 Gene3D Transferase(Phosphotransferase) domain 1 169 389 - -
Accr11g00001 399 Pfam Protein tyrosine and serine/threonine kinase 87 364 IPR001245 GO:0004672|GO:0006468
Accr11g00001 399 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 169 376 - -
Accr11g00001 399 SUPERFAMILY Protein kinase-like (PK-like) 65 366 IPR011009 -
Accr11g00001 399 Gene3D Phosphorylase Kinase; domain 1 69 168 - -
Accr11g00001 399 MobiDBLite consensus disorder prediction 7 46 - -
Accr11g00001 399 FunFam Serine/threonine-protein kinase BIK1 52 168 - -
Accr11g00001 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Accr11g00001 399 PANTHER OS01G0588500 PROTEIN-RELATED 33 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g00001 Accr-Chr11 10166 15033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g00001 68 368 Receptor kinase-like Gene Family AT4G02010 52.131 7.17e-103 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Accr11g00001 PK_Tyr_Ser-Thr 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g00001 - - gmx:100305417 613.994