Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01988 ATGGTGGTGATCATGCAGCAGCAGCAGAATCCATCTGCAGTGGTGCCACAGCTCAACAACAATCCTCAGTCCTCCTCTGCCACCACCACCTCCTCCCTTAGGCCGCCGCCTTCTGCAACACCACTACCGGGGTCCCAGTTATCTTCCTCACTCCCTCTTGTTTCTCCTATCTCCGCTCTCATACGCCAAACTCATCTGCCATCACTGCCACCCGATCATGTTATTGGACCAGTGGTGCCCATCGCCGCCACGCACCCTTCCGGTGAGCCCGCTTTGACAGCCCCACCTGCCTGCCCGTTGCCTAGAGTCCGACTCTCGGACATTGCCCTTTACGACGGAGCTCCAGCTAGGTCTTATGTTAGAGCAGTGGAAGTACTGTCAGGGTCTTTGATGAGGCACAATGCAGCCTTGATCGAATTGGGCTGCGAGGATACCGCTCTGATTAGGTGCGGATTGGAAGCTTCGAGATTGTTCTTTCGGAGCAGGGACCATCTGGGTGGTGGGAAGGGAAGCCGTGGGGTTCACATGTACAGGGCAGGAAGGGCTTTGGAAGACTGGGATTCATCTCCACCATGTATGGCTGATATTTTTAGGTGCATGGGAAAGGCAGCTCGTACTACTTTGTGTGCCATCGCTAGGCATCTTCGTCTTCGAAGCGATGTTTTTAACCATTTGCTTGATGATACCCCATTGCCTGTTAATGAGGTGTCCTCATCAGTTCTTGTTGCGACCTACTCACACGCTTCTTTGCCAAATGGAAAAGGTGCTATTGGAGGCGGTAAGCCATCCGTGAATGGTGAAATTGAGAAGGGTTTGTTGACATTGATATCTTCAGACGCACCTGGTCTTCAGGTTTGTGATCCCAATGGCCGCTGGTATCTTGCTGATAGTGGGTCTGGTCCTGGGGATCTTTTGTTGCTCACAGGCAAGGCACTTAGCCAAGCCACTGCAGGGCTTCGTCCTGCAGCATCATATAGAGCTTCACCTGATTATTTTCTAGGTGCTAACAGTGGAGGAAGGACATCTCTTGCATTTAGACTCATGCCGCAGGGCAATGCTATATTGGACTGTTCTCCAATTGCAGCAGCTGGACATGTTATTCCCCAAAGCTATGTTCCAATATCAGTAAGCCAGTTTATGGATGACCTTTCTGCTGAAGAAGTGATAGGCAGCCGATCTTATCATACTTATGTTGCTGGAAACAATGTGAATAAGGAACAATCATTGAGAAGTGTTCTGTCAGATCCTTTGTCTGGTGCATTCCTTGAAGACGCCATGCTTGTCTCATGTGGGCATTCATTTGGTGGTCTCATGCTAAGGAGAGTCATCGAAAGTTCAAGATGTACTCTCTGCAATACAAATATTGAGACCAGTTCTCTGATCCCCAATTTTGCTCTAAGAGCGGCAGCCGCTGCAGTCAAACATGAGGATGATCGGCGGTTATTTCATAATGCTGTTCTTCGAAAGCGCCGGAAAGAAATGGGTGATCAAATGGATTCAGTGAGAAGAACAAATAGGGAAAACGGAGATGTTACTGGTGATGATGGACCTGTCCGGGGAGTACAGTATCCTTTTTCAGTAAATGAGAAGGTGATAATTAAGGGTAATAGGAGGACACCAGAAAAATTCGTTGGCAAAGAAGCTGTAATTACATCTCAGTGTCTTAATGGCTGGTACTTGCTTAAGATTATTGGGACTGGGGAAAATGTGCGCTTGCAATACCGGTCTCTTAGTAAGCTATTGAACTCACAAGCGATAGAGGACCAGTCACAGCCAATTCAAAATAGCAGCTCTTAA 1797 0.4836 MVVIMQQQQNPSAVVPQLNNNPQSSSATTTSSLRPPPSATPLPGSQLSSSLPLVSPISALIRQTHLPSLPPDHVIGPVVPIAATHPSGEPALTAPPACPLPRVRLSDIALYDGAPARSYVRAVEVLSGSLMRHNAALIELGCEDTALIRCGLEASRLFFRSRDHLGGGKGSRGVHMYRAGRALEDWDSSPPCMADIFRCMGKAARTTLCAIARHLRLRSDVFNHLLDDTPLPVNEVSSSVLVATYSHASLPNGKGAIGGGKPSVNGEIEKGLLTLISSDAPGLQVCDPNGRWYLADSGSGPGDLLLLTGKALSQATAGLRPAASYRASPDYFLGANSGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEVIGSRSYHTYVAGNNVNKEQSLRSVLSDPLSGAFLEDAMLVSCGHSFGGLMLRRVIESSRCTLCNTNIETSSLIPNFALRAAAAAVKHEDDRRLFHNAVLRKRRKEMGDQMDSVRRTNRENGDVTGDDGPVRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLSKLLNSQAIEDQSQPIQNSSS 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01988 598 SUPERFAMILY RING/U-box 409 475 - -
Accr10g01988 598 MobiDBLite consensus disorder prediction 1 47 - -
Accr10g01988 598 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 98 595 - -
Accr10g01988 598 SUPERFAMILY Clavaminate synthase-like 190 380 - -
Accr10g01988 598 Gene3D - 171 389 IPR027443 -
Accr10g01988 598 MobiDBLite consensus disorder prediction 1 35 - -
Accr10g01988 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 477 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01988 Accr-Chr10 44554697 44581649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01988 409 579 Plant U-box Gene Family AT5G05230 42.197 4.79e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01988 - - adu:107477161 910.212