Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01987 ATGAGTACTCGAGCGCTCAGGGGTGCTGCTGTTAGAAGTTACCGGCGGAGAAAGACTGCTCTGGACTTGGACCTTAACCAGGCCCCGCCGGGTGAAATTCGGGAGCTGGAGGGACCTTCAACTCAGCTGGAGCCTCAAGGAGTTCAAGCTATTCTTCAACCTGCGATGATTGATGTTGAGGCCATTGATGATGATGTTGTTGAATCTACTCCCCGGGCCTTTGCTGAGGCTAAAAACAATTCAAGGAGAAACCGAAGCAGGGCTATAGTTGATGTGGATTTAGAAGACCAGACTAGGGTAGCTAAGAATAATCGCAACAAACGCAGAAGAGATTATCCAAGCCAAACGATTATTAACTGTGATCTTTATATAAACTTGGAAGGCAGTAGCAGTTCTATGAAAGAAAATGTTAGGAAATCTCCTGAACCACCCGAGGAGCCTGTTTTCAACTGCCCAATCTGCATGGGTCCTTTGGTTGAAGAAATGTCGACCAGGTGTGGTCATATTTTTTGCAAGAGTTGCATTAAGGCGGCAATAAATGCACAGGGCAAATGCCCTACCTGTAGGAAAAGGGTTACTGCAAAAGAGCTCATAAGGGTTTTTCTCCCATCAACTAGTTGA 621 0.4605 MSTRALRGAAVRSYRRRKTALDLDLNQAPPGEIRELEGPSTQLEPQGVQAILQPAMIDVEAIDDDVVESTPRAFAEAKNNSRRNRSRAIVDVDLEDQTRVAKNNRNKRRRDYPSQTIINCDLYINLEGSSSSMKENVRKSPEPPEEPVFNCPICMGPLVEEMSTRCGHIFCKSCIKAAINAQGKCPTCRKRVTAKELIRVFLPSTS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01987 206 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Accr10g01987 206 SMART ring_2 151 188 IPR001841 -
Accr10g01987 206 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Accr10g01987 206 Pfam Zinc finger, C3HC4 type (RING finger) 150 188 - -
Accr10g01987 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 204 IPR013083 -
Accr10g01987 206 PANTHER ELFLESS, ISOFORM B 1 206 - -
Accr10g01987 206 SUPERFAMILY RING/U-box 150 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01987 Accr-Chr10 44516845 44519505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01987 12 205 C3H Transcription Factor Family AT5G48655 51.500 5.91e-54 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01987 K22651 - qsa:O6P43_016885 302.753