Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01986 ATGAGTACTCGAGCGCTCAGGGGTGCTGCTGTTAGAAGTTACCGGCGGAGAAAGACTGCTCTGGACTTGGACCTTAACCAGGCCCCGCCGGGTGAAATTCGGGAGCTGGAGGGACCTTCAACTCAGCTGGAGCCTCAAGGAGTTCAAGCTATTCTTCAACCTGCGATGATTGATGTTGAGGCCATTGATGATGATGTTGTTGAATCTACTCCCCGGGCCTTTGCTGAGGCTAAAAACAATTCAAGGAGAAACCGAAGCAGGGCTATAGTTGATGTGGATTTAGACCAGACTAGGGTAGCTAAGAATAATCGCAACAAACGCAGAAGAGATTATCCAAGCCAAACGATTATTAACTGTGATCTTTATATAAACTTGGAAGGCAGTAGCAGTTCTATGAAAGAAAATGTTAGGAAATCTCCTGAACCACCCGAGGAGCCTGTTTTCAACTGCCCAATCTGCATGGGTCCTTTGGTTGAAGAAATGTCGACCAGGTGTGGTCATATTTTTTGCAAGAGTTGCATTAAGGCGGCAATAAATGCACAGGGCAAATGCCCTACCTGTAGGAAAAGGGTTACTGCAAAAGAGCTCATAAGGGTTTTTCTCCCATCAACTAGTTGA 618 0.4612 MSTRALRGAAVRSYRRRKTALDLDLNQAPPGEIRELEGPSTQLEPQGVQAILQPAMIDVEAIDDDVVESTPRAFAEAKNNSRRNRSRAIVDVDLDQTRVAKNNRNKRRRDYPSQTIINCDLYINLEGSSSSMKENVRKSPEPPEEPVFNCPICMGPLVEEMSTRCGHIFCKSCIKAAINAQGKCPTCRKRVTAKELIRVFLPSTS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01986 205 Pfam Zinc finger, C3HC4 type (RING finger) 149 187 - -
Accr10g01986 205 SUPERFAMILY RING/U-box 149 194 - -
Accr10g01986 205 PANTHER ELFLESS, ISOFORM B 1 205 - -
Accr10g01986 205 SMART ring_2 150 187 IPR001841 -
Accr10g01986 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 203 IPR013083 -
Accr10g01986 205 ProSitePatterns Zinc finger RING-type signature. 165 174 IPR017907 -
Accr10g01986 205 ProSiteProfiles Zinc finger RING-type profile. 150 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01986 Accr-Chr10 44516845 44519505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01986 12 204 C3H Transcription Factor Family AT5G48655 51.500 2.08e-52 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01986 K22651 - qsa:O6P43_016885 296.204