Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01985 ATGCCTTTTGTTTTTTTTAAGTGTTTGAAGTTGGATAAGGAAATCTTGTATATAATGAGTACTCGAGCGCTCAGGGGTGCTGCTGTTAGAAGTTACCGGCGGAGAAAGACTGCTCTGGACTTGGACCTTAACCAGGCCCCGCCGGGTGAAATTCGGGAGCTGGAGGGACCTTCAACTCAGCTGGAGCCTCAAGGAGTTCAAGCTATTCTTCAACCTGCGATGATTGATGTTGAGGCCATTGATGATGATGTTGTTGAATCTACTCCCCGGGCCTTTGCTGAGGCTAAAAACAATTCAAGGAGAAACCGAAGCAGGGCTATAGTTGATGTGGATTTAGAAGACCAGACTAGGGTAGCTAAGAATAATCGCAACAAACGCAGAAGAGATTATCCAAGCCAAACGATTATTAACTGTGATCTTTATATAAACTTGGAAGGCAGTAGCAGTTCTATGAAAGAAAATGTTAGGAAATCTCCTGAACCACCCGAGGAGCCTGTTTTCAACTGCCCAATCTGCATGGGTCCTTTGGTTGAAGAAATGTCGACCAGGTGTGGTCATATTTTTTGCAAGAGTTGCATTAAGGCGGCAATAAATGCACAGGGCAAATGCCCTACCTGTAGGAAAAGGGTTACTGCAAAAGAGCTCATAAGGGTTTTTCTCCCATCAACTAGTTGA 675 0.4444 MPFVFFKCLKLDKEILYIMSTRALRGAAVRSYRRRKTALDLDLNQAPPGEIRELEGPSTQLEPQGVQAILQPAMIDVEAIDDDVVESTPRAFAEAKNNSRRNRSRAIVDVDLEDQTRVAKNNRNKRRRDYPSQTIINCDLYINLEGSSSSMKENVRKSPEPPEEPVFNCPICMGPLVEEMSTRCGHIFCKSCIKAAINAQGKCPTCRKRVTAKELIRVFLPSTS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01985 224 ProSitePatterns Zinc finger RING-type signature. 184 193 IPR017907 -
Accr10g01985 224 SMART ring_2 169 206 IPR001841 -
Accr10g01985 224 SUPERFAMILY RING/U-box 168 213 - -
Accr10g01985 224 Pfam Zinc finger, C3HC4 type (RING finger) 168 206 - -
Accr10g01985 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 222 IPR013083 -
Accr10g01985 224 PANTHER ELFLESS, ISOFORM B 19 224 - -
Accr10g01985 224 ProSiteProfiles Zinc finger RING-type profile. 169 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01985 Accr-Chr10 44516845 44519559 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01985 30 223 C3H Transcription Factor Family AT5G48655 51.500 1.34e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01985 K22651 - qsa:O6P43_016885 302.753