Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01984 ATGCCTTTTGTTTTTTTTAAGTGTTTGAAGTTGGATAAGGAAATCTTGTATATAATGAGTACTCGAGCGCTCAGGGGTGCTGCTGTTAGAAGTTACCGGCGGAGAAAGACTGCTCTGGACTTGGACCTTAACCAGGCCCCGCCGGGTGAAATTCGGGAGCTGGAGGGACCTTCAACTCAGCTGGAGCCTCAAGGAGTTCAAGCTATTCTTCAACCTGCGATGATTGATGTTGAGGCCATTGATGATGATGTTGTTGAATCTACTCCCCGGGCCTTTGCTGAGGCTAAAAACAATTCAAGGAGAAACCGAAGCAGGGCTATAGTTGATGTGGATTTAGACCAGACTAGGGTAGCTAAGAATAATCGCAACAAACGCAGAAGAGATTATCCAAGCCAAACGATTATTAACTGTGATCTTTATATAAACTTGGAAGGCAGTAGCAGTTCTATGAAAGAAAATGTTAGGAAATCTCCTGAACCACCCGAGGAGCCTGTTTTCAACTGCCCAATCTGCATGGGTCCTTTGGTTGAAGAAATGTCGACCAGGTGTGGTCATATTTTTTGCAAGAGTTGCATTAAGGCGGCAATAAATGCACAGGGCAAATGCCCTACCTGTAGGAAAAGGGTTACTGCAAAAGAGCTCATAAGGGTTTTTCTCCCATCAACTAGTTGA 672 0.4449 MPFVFFKCLKLDKEILYIMSTRALRGAAVRSYRRRKTALDLDLNQAPPGEIRELEGPSTQLEPQGVQAILQPAMIDVEAIDDDVVESTPRAFAEAKNNSRRNRSRAIVDVDLDQTRVAKNNRNKRRRDYPSQTIINCDLYINLEGSSSSMKENVRKSPEPPEEPVFNCPICMGPLVEEMSTRCGHIFCKSCIKAAINAQGKCPTCRKRVTAKELIRVFLPSTS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01984 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 221 IPR013083 -
Accr10g01984 223 SMART ring_2 168 205 IPR001841 -
Accr10g01984 223 ProSiteProfiles Zinc finger RING-type profile. 168 206 IPR001841 -
Accr10g01984 223 ProSitePatterns Zinc finger RING-type signature. 183 192 IPR017907 -
Accr10g01984 223 PANTHER ELFLESS, ISOFORM B 19 223 - -
Accr10g01984 223 Pfam Zinc finger, C3HC4 type (RING finger) 167 205 - -
Accr10g01984 223 SUPERFAMILY RING/U-box 167 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01984 Accr-Chr10 44516845 44519559 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01984 30 222 C3H Transcription Factor Family AT5G48655 51.500 4.92e-52 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01984 K22651 - qsa:O6P43_016885 296.204