Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01979 ATGTACTTTAGGAGAATACAATGTCAAGATTGGAGGTGGGGCGTGTTGTTTCAGCCACCCAAATACTTTAGGCCAAGATGCTATGGTCATGCATGCTTTCAACCTCAGTGCCCCAAGACTACTGTGGAAGAATGTGTTTCGCATCATAGCATAATAAGGAGACATCTATTGGAATCTTTTTTATCTAGGGTTGCATCATCTAATAATAATTGTACTGATTTGAACAGAAGGCCTAGTTTATTTTTGAGAAGCACTCAGTTACGCTTCTACAGTTCTGAAAGTGATGGAAGGAATGCAAGTGAGGATAAACATTTAAATGCAAATGATGGAGCTCACTGTGATAAGGGAAAGAACTGGCATGATAAGTTTGGGGAAGATGCGAAACTCTGTAATGCTCATGCTCGACTTGGGGAACAGGATCAAGAGGAGTGGCTCAAGAATGAGAAGATTGCCATTGAAAATAAAAAGAGAGAATCACCCTTTTTGACGAGAAAGGATAAGTTCAAAAATGAGTTTCTGAGAAGGGTTGTTCCTTGGGAGAAAATAAACATTTCATGGGACACATTTCCTTACTATGTTCATGAGAATACCAAAAAACTTCTGGTTGAATGTGCTGCTTCCTATTTGAGACATAATAAGGTTGCTTCTTCTTATGGCACTCGCCTCTCATCTTCAAGTGGGAGGATATTGCTCCAGAGCGTTCCTGGTACTGAGCTCTATCGAGAGAGATTAGTTAGAGCCCTTGCACAAGATCTAAAAGTCCCTTTACTGGTTCTTGATAGCAATATCCTTGCTCCTTATTATATTGATGATGACTTATCATCGTCAGATTGTGAGTCTGATGATGATAGTGCAGAATCTGGAGAGGAGGCTTCTATGGAGTCAGAGAATGAAGATGATAACAATGCAAGCAATGAAGAAGAGTGGACTAGCAGTACTGAGGCAAAGTCAGATGCTAGTGATAACGAAGAACATGATGCAATAGCAACTGCTGAGGCAGCCCTTAAGAAGAGGTCATCTGAAGAGTCAGAAAGTTCTGAGTCAACCAAATCTGAGGTTGTGAAGCCTTCCGACCACCAATCTGGATGCCAATTAAAGAAAGGTGACCGTGTGAAATACATTGGGCCGTCTGTTCAAATGAAAGACAACAATAGATCTTTGTCCAATGGTCAACGGGGAGAGGTATATGAGGTGGAGGGGGATCAAATTGCTGTCATCATGGACATCAGCGAAGATAATATAAAGGATGGTGAGATGGAGAAATCTAATGAACATACAGAATCCCGACTTTGTTGGATACATGTTAAGGACATTGAGCATGATCTTGATGCTCAAATACAGGATTGCTACATAGCTATGGAGGCTCTATGCGAGGTTTTGGATTCCAAACAACCCCTTATTGTCTATTTTCCAGACAGTACACAGTGGTTTCATAAATCAGTCGTGAAGTCAAACAGAAAAGAGTTCTTTCATAAGGTTCAAGAAATGTTTCACAAGTTGTCTGGACCAGTTGTGTTGATTTGTGGACAAAACAAAATTCAATCAGGATCAAAAGAGAAAAAGCAATTTACAATGATACTTCCAAACTTTGGACGCGTGGGTAAGCTGCCTCTTTCTCTGAAACACTTGACTGAGGGACTTGGAGCAACGAAGAGACTGGATGATGATGATGAAATCCACAAGCTTTTCACTAATGTTTTGTGCATAAATCCGCCTAAGGAGGAGGATCAGCTTGGAACTTTCAAAAAACAACTTGAGGAAGACAGGAAAATTGTGATTTCACGTACTAGTTTGAATGAACTACACAAGGTTCTTGAAGAACATGAGCTATCATGCTTGGACCTCTTGCAAGTAAATACCCATGATCTCATTCTGACAAAGCAAAAAGCTGAAAAGGTGGTGGGCTGGGCCAAAAATAATTATTTGTCATCTTGCGCACTTCCTTATGTTAAAGGAGAAAGATTATGCCTGCCTCGTGAAAGTCTTGAAACTGCAATCTCAAGATTGAGGGATCAAGAAACTATGTCACGGAAGCCCTCTCAGGGTCTGAAGAACCTTGCTAAGGATGAGTATGAGAGCAACTTTATCTCGGCTGTAGTACCTCCTGGTGAAATTGGGGTGAAGTTTGATGACGTAGGTGCTCTTGAAGATGTGAAGAAGGCACTTAATGAACTCGTCATCCTTCCAATGAGAAGGCCAGAGCTTTTCTCTCGTGGAAACTTGTTACGGCCTTGCAAAGGAATATTACTTTTTGGTCCTCCTGGCACTGGGAAAACTCTTCTGGCCAAGGCACTTGCAACAGAAGCAGGCGCAAATTTTATCAGCATAACTGGTTCAACTCTAACATCAAAGTGGTTTGGAGATGCTGAGAAACTTACCAAAGCCCTTTTCTCCTTTGCTAGCAAGCTTGCTCCTGTCATTATATTTGTTGATGAAGTTGATAGTTTGCTTGGTGCTCGAGGGGGTGCTTTTGAGCATGAAGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCTTGGGATGGATTGAGGACAAAAGAGAGTCAAAGAATCCTCATTCTTGGTGCAACAAACAGGCCTTTTGATCTTGATGATGCTGTTATACGCCGCTTACCAAGAAGGATATATGTGGATTTGCCAGATGCTGAAAATCGGATGAAGATTTTAAGAATCTTCCTTGCACAAGAAAATCTTGATCTTGATTTTCAGTTTAACAAACTCGCTAACTTGACTGAGGGATACTCTGGCAGTGATCTGAAGAACCTTTGCATTGCTGCGGCATATAGACCTGTTCAAGAGCTTCTAGAGAATGAAAAGAAGGCGAGCTACAGTGACTTAAGACCGACATTAAGGCCTCTAAAATTGGATGATTTTATTCAGGCAAAATCTAAGGTTGGGCCATCAGTTGCGTATGATGCAGCAAGCATGAATGAGTTGAGGAAGTGGAATGAAATGTACGGAGAAGGTGGAAGCAGGACAAAATCTCCATTTGGATTTGGAAGCTGA 3006 0.4138 MYFRRIQCQDWRWGVLFQPPKYFRPRCYGHACFQPQCPKTTVEECVSHHSIIRRHLLESFLSRVASSNNNCTDLNRRPSLFLRSTQLRFYSSESDGRNASEDKHLNANDGAHCDKGKNWHDKFGEDAKLCNAHARLGEQDQEEWLKNEKIAIENKKRESPFLTRKDKFKNEFLRRVVPWEKINISWDTFPYYVHENTKKLLVECAASYLRHNKVASSYGTRLSSSSGRILLQSVPGTELYRERLVRALAQDLKVPLLVLDSNILAPYYIDDDLSSSDCESDDDSAESGEEASMESENEDDNNASNEEEWTSSTEAKSDASDNEEHDAIATAEAALKKRSSEESESSESTKSEVVKPSDHQSGCQLKKGDRVKYIGPSVQMKDNNRSLSNGQRGEVYEVEGDQIAVIMDISEDNIKDGEMEKSNEHTESRLCWIHVKDIEHDLDAQIQDCYIAMEALCEVLDSKQPLIVYFPDSTQWFHKSVVKSNRKEFFHKVQEMFHKLSGPVVLICGQNKIQSGSKEKKQFTMILPNFGRVGKLPLSLKHLTEGLGATKRLDDDDEIHKLFTNVLCINPPKEEDQLGTFKKQLEEDRKIVISRTSLNELHKVLEEHELSCLDLLQVNTHDLILTKQKAEKVVGWAKNNYLSSCALPYVKGERLCLPRESLETAISRLRDQETMSRKPSQGLKNLAKDEYESNFISAVVPPGEIGVKFDDVGALEDVKKALNELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRTKESQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAQENLDLDFQFNKLANLTEGYSGSDLKNLCIAAAYRPVQELLENEKKASYSDLRPTLRPLKLDDFIQAKSKVGPSVAYDAASMNELRKWNEMYGEGGSRTKSPFGFGS 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01979 1001 Pfam AAA+ lid domain 901 936 IPR041569 -
Accr10g01979 1001 MobiDBLite consensus disorder prediction 274 305 - -
Accr10g01979 1001 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 706 882 - -
Accr10g01979 1001 MobiDBLite consensus disorder prediction 311 354 - -
Accr10g01979 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 706 936 IPR027417 -
Accr10g01979 1001 Gene3D - 707 983 IPR027417 -
Accr10g01979 1001 SMART AAA_5 744 881 IPR003593 GO:0016887
Accr10g01979 1001 ProSitePatterns AAA-protein family signature. 851 870 IPR003960 GO:0005524|GO:0016887
Accr10g01979 1001 Pfam ATPase family associated with various cellular activities (AAA) 748 878 IPR003959 GO:0005524|GO:0016887
Accr10g01979 1001 MobiDBLite consensus disorder prediction 274 368 - -
Accr10g01979 1001 Gene3D - 880 965 - -
Accr10g01979 1001 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 167 994 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01979 Accr-Chr10 44324843 44343439 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01979 707 949 Calmodulin-binding Proteins AT3G56690 38.492 5.54e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01979 - - gmx:100812718 1470.68