LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr10g01978	ATGTACTTTAGGAGAATACAATGTCAAGATTGGAGGTGGGGCGTGTTGTTTCAGCCACCCAAATACTTTAGGCCAAGATGCTATGGTCATGCATGCTTTCAACCTCAGTGCCCCAAGACTACTGTGGAAGAATGTGTTTCGCATCATAGCATAATAAGGAGACATCTATTGGAATCTTTTTTATCTAGGGTTGCATCATCTAATAATAATTGTACTGATTTGAACAGAAGGCCTAGTTTATTTTTGAGAAGCACTCAGTTACGCTTCTACAGTTCTGAAAGTGATGGAAGGAATGCAAGTGAGGATAAACATTTAAATGCAAATGATGGAGCTCACTGTGATAAGGGAAAGAACTGGCATGATAAGTTTGGGGAAGATGCGAAACTCTGTAATGCTCATGCTCGACTTGGGGAACAGGATCAAGAGGAGTGGCTCAAGAATGAGAAGATTGCCATTGAAAATAAAAAGAGAGAATCACCCTTTTTGACGAGAAAGGATAAGTTCAAAAATGAGTTTCTGAGAAGGGTTGTTCCTTGGGAGAAAATAAACATTTCATGGGACACATTTCCTTACTATGTTCATGAGAATACCAAAAAACTTCTGGTTGAATGTGCTGCTTCCTATTTGAGACATAATAAGGTTGCTTCTTCTTATGGCACTCGCCTCTCATCTTCAAGTGGGAGGATATTGCTCCAGAGCGTTCCTGGTACTGAGCTCTATCGAGAGAGATTAGTTAGAGCCCTTGCACAAGATCTAAAAGTCCCTTTACTGGTTCTTGATAGCAATATCCTTGCTCCTTATTATATTGATGATGACTTATCATCGTCAGATTGTGAGTCTGATGATGATAGTGCAGAATCTGGAGAGGAGGCTTCTATGGAGTCAGAGAATGAAGATGATAACAATGCAAGCAATGAAGAAGAGTGGACTAGCAGTACTGAGGCAAAGTCAGATGCTAGTGATAACGAAGAACATGATGCAATAGCAACTGCTGAGGCAGCCCTTAAGAAGAGGTCATCTGAAGAGTCAGAAAGTTCTGAGTCAACCAAATCTGAGGTTGTGAAGCCTTCCGACCACCAATCTGGATGCCAATTAAAGAAAGGTGACCGTGTGAAATACATTGGGCCGTCTGTTCAAATGAAAGACAACAATAGGATCATACTGGGGAAGATTCTGACATCTGATGGTCCAACTAATGCTTACACTAATATCCATGGCAGATCTTTGTCCAATGGTCAACGGGGAGAGGTATATGAGGTGGAGGGGGATCAAATTGCTGTCATCATGGACATCAGCGAAGATAATATAAAGGATGGTGAGATGGAGAAATCTAATGAACATACAGAATCCCGACTTTGTTGGATACATGTTAAGGACATTGAGCATGATCTTGATGCTCAAATACAGGATTGCTACATAGCTATGGAGGCTCTATGCGAGGTTTTGGATTCCAAACAACCCCTTATTGTCTATTTTCCAGACAGTACACAGTGGTTTCATAAATCAGTCGTGAAGTCAAACAGAAAAGAGTTCTTTCATAAGGTTCAAGAAATGTTTCACAAGTTGTCTGGACCAGTTGTGTTGATTTGTGGACAAAACAAAATTCAATCAGGATCAAAAGAGAAAAAGCAATTTACAATGATACTTCCAAACTTTGGACGCGTGGGTAAGCTGCCTCTTTCTCTGAAACACTTGACTGAGGGACTTGGAGCAACGAAGAGACTGGATGATGATGATGAAATCCACAAGCTTTTCACTAATGTTTTGTGCATAAATCCGCCTAAGGAGGAGGATCAGCTTGGAACTTTCAAAAAACAACTTGAGGAAGACAGGAAAATTGTGATTTCACGTACTAGTTTGAATGAACTACACAAGGTTCTTGAAGAACATGAGCTATCATGCTTGGACCTCTTGCAAGTAAATACCCATGATCTCATTCTGACAAAGCAAAAAGCTGAAAAGGTGGTGGGCTGGGCCAAAAATAATTATTTGTCATCTTGCGCACTTCCTTATGTTAAAGGAGAAAGATTATGCCTGCCTCGTGAAAGTCTTGAAACTGCAATCTCAAGATTGAGGGATCAAGAAACTATGTCACGGAAGCCCTCTCAGGGTCTGAAGAACCTTGCTAAGGATGAGTATGAGAGCAACTTTATCTCGGCTGTAGTACCTCCTGGTGAAATTGGGGTGAAGTTTGATGACGTAGGTGCTCTTGAAGATGTGAAGAAGGCACTTAATGAACTCGTCATCCTTCCAATGAGAAGGCCAGAGCTTTTCTCTCGTGGAAACTTGTTACGGCCTTGCAAAGGAATATTACTTTTTGGTCCTCCTGGCACTGGGAAAACTCTTCTGGCCAAGGCACTTGCAACAGAAGCAGGCGCAAATTTTATCAGCATAACTGGTTCAACTCTAACATCAAAGTGGTTTGGAGATGCTGAGAAACTTACCAAAGCCCTTTTCTCCTTTGCTAGCAAGCTTGCTCCTGTCATTATATTTGTTGATGAAGTTGATAGTTTGCTTGGTGCTCGAGGGGGTGCTTTTGAGCATGAAGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCTTGGGATGGATTGAGGACAAAAGAGAGTCAAAGAATCCTCATTCTTGGTGCAACAAACAGGCCTTTTGATCTTGATGATGCTGTTATACGCCGCTTACCAAGAAGGATATATGTGGATTTGCCAGATGCTGAAAATCGGATGAAGATTTTAAGAATCTTCCTTGCACAAGAAAATCTTGATCTTGATTTTCAGTTTAACAAACTCGCTAACTTGACTGAGGGATACTCTGGCAGTGATCTGAAGAACCTTTGCATTGCTGCGGCATATAGACCTGTTCAAGAGCTTCTAGAGAATGAAAAGAAGGCGAGCTACAGTGACTTAAGACCGACATTAAGGCCTCTAAAATTGGATGATTTTATTCAGGCAAAATCTAAGGTTGGGCCATCAGTTGCGTATGATGCAGCAAGCATGAATGAGTTGAGGAAGTGGAATGAAATGTACGGAGAAGGTGGAAGCAGGACAAAATCTCCATTTGGATTTGGAAGCTGA	3072	0.4141	MYFRRIQCQDWRWGVLFQPPKYFRPRCYGHACFQPQCPKTTVEECVSHHSIIRRHLLESFLSRVASSNNNCTDLNRRPSLFLRSTQLRFYSSESDGRNASEDKHLNANDGAHCDKGKNWHDKFGEDAKLCNAHARLGEQDQEEWLKNEKIAIENKKRESPFLTRKDKFKNEFLRRVVPWEKINISWDTFPYYVHENTKKLLVECAASYLRHNKVASSYGTRLSSSSGRILLQSVPGTELYRERLVRALAQDLKVPLLVLDSNILAPYYIDDDLSSSDCESDDDSAESGEEASMESENEDDNNASNEEEWTSSTEAKSDASDNEEHDAIATAEAALKKRSSEESESSESTKSEVVKPSDHQSGCQLKKGDRVKYIGPSVQMKDNNRIILGKILTSDGPTNAYTNIHGRSLSNGQRGEVYEVEGDQIAVIMDISEDNIKDGEMEKSNEHTESRLCWIHVKDIEHDLDAQIQDCYIAMEALCEVLDSKQPLIVYFPDSTQWFHKSVVKSNRKEFFHKVQEMFHKLSGPVVLICGQNKIQSGSKEKKQFTMILPNFGRVGKLPLSLKHLTEGLGATKRLDDDDEIHKLFTNVLCINPPKEEDQLGTFKKQLEEDRKIVISRTSLNELHKVLEEHELSCLDLLQVNTHDLILTKQKAEKVVGWAKNNYLSSCALPYVKGERLCLPRESLETAISRLRDQETMSRKPSQGLKNLAKDEYESNFISAVVPPGEIGVKFDDVGALEDVKKALNELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRTKESQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAQENLDLDFQFNKLANLTEGYSGSDLKNLCIAAAYRPVQELLENEKKASYSDLRPTLRPLKLDDFIQAKSKVGPSVAYDAASMNELRKWNEMYGEGGSRTKSPFGFGS	1023

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr10g01978	1023	MobiDBLite	consensus disorder prediction	274	305	-	-
	Accr10g01978	1023	MobiDBLite	consensus disorder prediction	311	354	-	-
	Accr10g01978	1023	ProSitePatterns	AAA-protein family signature.	873	892	IPR003960	GO:0005524\|GO:0016887
	Accr10g01978	1023	MobiDBLite	consensus disorder prediction	274	370	-	-
	Accr10g01978	1023	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	728	904	-	-
	Accr10g01978	1023	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	167	1016	-	-
	Accr10g01978	1023	Pfam	ATPase family associated with various cellular activities (AAA)	770	900	IPR003959	GO:0005524\|GO:0016887
	Accr10g01978	1023	Gene3D	-	729	1005	IPR027417	-
	Accr10g01978	1023	Gene3D	-	902	987	-	-
	Accr10g01978	1023	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	728	958	IPR027417	-
	Accr10g01978	1023	SMART	AAA_5	766	903	IPR003593	GO:0016887
	Accr10g01978	1023	Pfam	AAA+ lid domain	923	958	IPR041569	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr10g01978	Accr-Chr10	44324843	44343439	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr10g01978	729	971	Calmodulin-binding Proteins	AT3G56690	38.492	6.89e-42	164