Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01954 ATGGAGAATAACACCGCAAACAACACCAAAGCAGTTTCAGGAGGAGCAAAACCTATCAATGACAACGAAGAGCGTTCCAATTTGAATGAACAGGAGCACACCGAAGAAGTGGATGTAGATGAGAATGGAGGTGGGGGTGGGGGTGAAGAAGAAGGAGAAAGAACTGGATCTGGCTCCATCCAGTCTCCTCATCGCACCCCTTCCAGAACCCCTTTTACTAATCTCAGTCAGGTCGATGCTGACCTCGCCCTTGCTCGAACCCTCCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAACAACGAAGGAAGTGATTATGGAAGTTGGGATGCTGGCAGCTATTTACATGATGATGGGGATGATTTTGAAGATCTACACGATGGTACTGATGATGATGGTGGGGATGATGGAGACGATGACCTTGATGATGAGGATGACGATGATGACATTAATGCTGATGAAGAATATGATGATGAAGATGCGTTTGATGCCCATGCTCATGGTAGTTCTGGAGAAATTGATGACACCAGCATTGATTTTGACCCTGATGTGTTCTCTAGTGATGAAGCCTATGCAAGAGCATTACAAGAGGCTGAAGAGAGGGATATGGCTGCTAGGCTATTTGCTATGGCTGGAATAAATGATCGGGAAGCTGAGGACATAGAAGACCATGGTGCTAATTCTCAGGAGGCATGGGAGGATGTTGATCCTGATGAACTTTCATATGAGGAACTCCTGGCATTGGCTGAAGTTGTTGGAACTGAGAGCAGAGGTCTTTCTACTGATACTATTGCCTCTTTGCCTTCAGTAAACTACACGATGGGTAGTGATCAGCACGGAAGTAATGATTCGTGTGTCATATGCCGGGTGGATTATGAGGATGGTGAATCCTTGACTGCACTTTCTTGCAAACATTTGTACCATCCCGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTGCTGAGGTTTCAGTTTCTGGGAGCAACTTGTAG 1014 0.4556 MENNTANNTKAVSGGAKPINDNEERSNLNEQEHTEEVDVDENGGGGGGEEEGERTGSGSIQSPHRTPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWDAGSYLHDDGDDFEDLHDGTDDDGGDDGDDDLDDEDDDDDINADEEYDDEDAFDAHAHGSSGEIDDTSIDFDPDVFSSDEAYARALQEAEERDMAARLFAMAGINDREAEDIEDHGANSQEAWEDVDPDELSYEELLALAEVVGTESRGLSTDTIASLPSVNYTMGSDQHGSNDSCVICRVDYEDGESLTALSCKHLYHPECINNWLKINKVCPVCSAEVSVSGSNL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01954 337 MobiDBLite consensus disorder prediction 103 183 - -
Accr10g01954 337 MobiDBLite consensus disorder prediction 1 15 - -
Accr10g01954 337 Pfam Ring finger domain 284 326 IPR001841 -
Accr10g01954 337 SUPERFAMILY RING/U-box 277 332 - -
Accr10g01954 337 ProSiteProfiles Zinc finger RING-type profile. 286 327 IPR001841 -
Accr10g01954 337 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 29 335 IPR043312 -
Accr10g01954 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 332 IPR013083 -
Accr10g01954 337 MobiDBLite consensus disorder prediction 124 161 - -
Accr10g01954 337 SMART ring_2 286 326 IPR001841 -
Accr10g01954 337 MobiDBLite consensus disorder prediction 1 77 - -
Accr10g01954 337 FunFam E3 ubiquitin ligase BIG BROTHER-related 252 333 - -
Accr10g01954 337 MobiDBLite consensus disorder prediction 55 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01954 Accr-Chr10 44066489 44070608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01954 50 230 C3H Transcription Factor Family AT3G19910 48.619 3.72e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01954 K19045 - gmx:100787418 426.017