Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01952 ATGGCTTCCTCCGGTGGAGTCGATCACGACGGCGGAACAAAACCTTTTTTCTGCTACAAATGCGATCGCAGAGTCGATATTGCCGCCTCCGATTATTCCGACCCTTTCTGTCCTGTGTGCCTGCAAGGGTTTCTTGAAGAAGTTGAAAACCCTAACCCTTTTGCAGACCCAGAGTCCTCTTTTGGCTTTGATCCTCTCTCCTTCATTCCCCTTCTCCTGTCCACTGCTTCTCGCACTAGGATTCGACCAGATTCCGTTGATGCTGACATATTCGACCCTGTTCATTTTCTCCAGAACCACCTTCGAGATCTTCAGGCTGATGGCGCGAACGTCCAATTCGAGATCAATAATCCTTCTGAACAAGCGTTTCGGCTACCCACAAACATTGGCGATTACTTTCTTGGTCCTGGCCTGGAGCAATTGATACAACAGCTCGCGGAGAACGACCCAAACCGTCATGGCACCCCACCTGCTTCGAAATCTGCCGTACAGAATCTTCCAACTGTTACTGTCACCGATGAATTGTTGAGCTCGGAAATGAATCAGTGTGCGGTATGTCAGGATGAGTTCGAGAAGGGTACCCAGGTAAAGCAAATGCCTTGCAAGCATGTGTATCATGATCATTGCCTGCTTCCTTGGCTCGAATTGCATAACTCTTGCCCTGTATGTCGATATGAGCTGCCCACCGATGACCCTGATTATGAGAACCCAGCCCACAGGGCCCAGGGGAATGCTAATGCGGGGTGGAGACCTGTTGGCAGCGCGAGCAGCAGCGGAGGGGGTAGCAGACCCGTTCAGAGGACTTTTAGGATATCATTGCGCTATCCATTTGGTTCACGTGAGTCTACTCAGGAGAGTAGCGAACGAGGATTGGGGAATATGCAAGAAGATTTGGATTGA 900 0.5033 MASSGGVDHDGGTKPFFCYKCDRRVDIAASDYSDPFCPVCLQGFLEEVENPNPFADPESSFGFDPLSFIPLLLSTASRTRIRPDSVDADIFDPVHFLQNHLRDLQADGANVQFEINNPSEQAFRLPTNIGDYFLGPGLEQLIQQLAENDPNRHGTPPASKSAVQNLPTVTVTDELLSSEMNQCAVCQDEFEKGTQVKQMPCKHVYHDHCLLPWLELHNSCPVCRYELPTDDPDYENPAHRAQGNANAGWRPVGSASSSGGGSRPVQRTFRISLRYPFGSRESTQESSERGLGNMQEDLD 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01952 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 230 IPR013083 -
Accr10g01952 299 Pfam zinc-ribbon 16 47 IPR039525 GO:0061630
Accr10g01952 299 SMART ring_2 183 223 IPR001841 -
Accr10g01952 299 FunFam E3 ubiquitin-protein ligase RING1-like 144 230 - -
Accr10g01952 299 Pfam Ring finger domain 181 224 IPR001841 -
Accr10g01952 299 SUPERFAMILY RING/U-box 162 232 - -
Accr10g01952 299 ProSiteProfiles Zinc finger RING-type profile. 183 224 IPR001841 -
Accr10g01952 299 MobiDBLite consensus disorder prediction 249 265 - -
Accr10g01952 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 95 228 - -
Accr10g01952 299 MobiDBLite consensus disorder prediction 277 291 - -
Accr10g01952 299 MobiDBLite consensus disorder prediction 234 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01952 Accr-Chr10 44045378 44046277 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01952 127 235 C3H Transcription Factor Family AT5G01980 50.459 1.26e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01952 K11982 - gmx:100785289 344.354