Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01948 ATGTCTCAGATATCTGGGCTACGCCCTGCTTTCCAGCCTCTCGAAGCATTGCAACCTAGCGCCAAGTTCACAGCTGATCCCGCACTTGCCTTTGTGAAAAAACATGAAAACGGTTCACTAGGAAGGGAGGTTTCTGAGGAAGTTCAAGACCCTGCTGGTGATATGGATCTTTTTGATGAGGATTCGCCATATGGTGGAAGAACTACAACGTTAGAAAGCAGGCCTTCAGCTAGCGATGATGGCACAGAATCTGCTCCTCAGCCACTCCCATCAATCTCCCCATCGTCCAGTGACCATTGGTGGAGTGATACAACACCTTATGTTTCAAAGAAGAAGATTCATTCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGGGAAGATAATATCCACTTCTGGGACGGAATCTGATATCACATTGCCTGATGGGAAAGTTTTAAAGGTTAAAGCTGAAGGTTTGGTTCCAGCAAACCCTGATATTCTTGATGGAGTGGATGACCTTATGCAGCTTAGTTATTTGAATGAACCATCAGTGTTATACAACCTGCAATATAGATACAACCGAAATATGATTTACACAAAAGCAGGGCCCGTTTTGGTTGCAATAAACCCATTTAAGAAAGTCCCTCTGTATGGAAATGATTATATTAAAGGATACAAGAATAAAGCTATGGAAAGCCCTCATGTATATGCCATTACGGACACAGCCATCCGGGAAATGATAAGAGATGAAGTGAATCAATCTATAATTATAAGTGGTGAAAGTGGAGCAGGCAAGACTGAGACAGCAAAGATAGCAATGCAGTACTTGGCTGCCCTTGGAGGTGGAAGTGGAATAGAGTATGAGATATTGAAGACTAATCCAATTCTTGAAGCCTTTGGCAATGCAAAAACATTGAGAAATGACAACTCAAGTCGCTTTGGGAAACTTATTGAGATTCACTTCAGTGAAACTGGAAAGATATCGGGTGCTAATATTCAGACATTTTTGCTAGAAAAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGGTCATACCATATATTCTATCAGCTGTGTGCTGGGGCACCGCCTTCTCTGAGGGAGAAGCTAAATCTACAAAGTGCGGAAGAATACAGATATCTGAGGCAAAGCAATTGTTTTTCCATTACTGGCGTTAATGATGGGGAAGAATTCCGCATAGTCATGGAAGCCTTGGATGTTGTCCATATCAGCAAAGAAAATCAGGAGAATGTATTTGCAATGCTTGCTGCAGTGTTATGGCTAGGGAACATATCATTTACTGTGATTGATAATGAAAATCATGTTCAACCCGTAGAAGATGAGGGTTTGTTCAACGTTGCTAAATTGATTGGCTGTGACATTGAGGATCTGAAGTTGACTTTATCAACTCGCAAAATGAAAGTTGGTAACGACATCATTGTCCAAAAGTTGACACTATCACAGGCAATTGATGCAAGAGATGCTTTGGCAAAGTCAATATATGCTTCTCTGTTTGATTGGCTGGTTGAACAAATAAACAATTCACTAGCTGTTGGTAAAAAACGCACTGGCAGATCAATCAGTATTTTAGACATCTATGGATTTGAATCTTTTGAGAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCGAATGAGAGATTGCAGCAACACTTCAACCGTCACTTATTCAAGTTAGAACAAGAGGAATATATACAGGATGGCATTGACTGGACTAAAGTTGAATTTGAAGACAACCAAGATTGCCTTAATCTTTTTGAAAAGAAGCCGCTGGGGTTACTATCCCTTTTAGATGAGGAGTCCACTTTCCCAAATGGTACAGATTTGACATTTGCTAACAAGCTTAGACAGCATCTGAATTCAAATTCATGTTTCCAAGGAGAACGAGGCAAAGCCTTTGCTGTGTGTCATTATGCAGGGGAGGTCACCTATGATACTACCGGATTTTTGGAGAAGAACAGGGACCTATTGCACTTGGATTCCATTCAACTTTTATCCTCATGCACATGCCATCTTCCCAAGCAATTTGCAGCCCATATGCTTTTGCAGTCTGAGAAGCCTGTAGTTGGTCCCTTACACAAGTCAGGTGGAGCAGATTCCCAGAAGCTAAGTGTTGCCACAAAGTTCAAGGGTCAACTGTTTCAACTGATGCAACGTTTGGAGAGCACCACACCGCATTTTATTCGATGCATTAAGCCTAATAACTTCCAGTCACCAGGATCATATGAGCAAGGGCTTGTTCTCCAGCAACTGAGATGTTGTGGAGTCCTGGAAGTGGTTCGAATATCAAGATCAGGTTTTCCTACTAGAATGTCTCATCAAAAGTTTGCTAGAAGATATGGTTTTCTTCTTCTTGAAAATGTTGCATCTCAGGATCCACTCAGTGTTTCAGTTGCAATTCTACATCAGTTTAGTATTTTGCCTGAGATGTATCAAGTTGGCTATACAAAATTATTTTTCCGAACAGGACAGATTGGAGTGCTTGAAGATACTAGAAATCGAACCCTCCATGGTATCTTACGTGTCCAAAGTTGCTTCAGGGGTCACCAAGCACGCTGTTATCACAGGGAGCTTAGGAGAGGAATCACTACTCTCCAGTCATTCATTAGGGGAGAGAAAACAAGAAACGAATATGCAGCTTCACTTCGGCGTCATAGAGCTGCTGTTGTTATACAGAAGCAGATGAAAGTAGTGTTTGCCAGAAGAAGAATGAAGAATATTTGTAATGCTTCGATAGTCATTCAATCAGCTATTCGTGGTTCGTTGGCCAGAAGATGCTCAGGAGATATGGGATTGTTGAAATCTATAGGGATGAAGACGAACGATTCAGACGAAGTGCTAGTCAAGACTTCTTTTCTGACTGAATTACAGCGTCGGGTACTCAAGGCTGAAGCTGCTCTGAGAGTGAAGAAAGAGGAAAATGACATTCTTCACCAGCGCCTCCAACAGTATGAGAGCCGTTGGTCTGAGTATGAATCAAAGATGAAATCAATGGAAGAAGGGTGGCAGAAACAAATGAGATCACTACAATCTAGCCTTTCCATTGCAAAAAAGAGCTTAGCAATTGACGACTCTGCAAGAAATTCGGATGCTTCTGTAAATGCAAGTGATGATAGAGATTATAGTTCAGATATAGGAAGCCATCATAGGCGCCAAGAAAGCAGCTCAAGTGTAGGAAACTATCACAGACGCCAAGAAAGCAATGGGTTTAGACCAGTGGGTGCAGGTTTGAACGTCATAAGTGGGTTGGCTCATGAATTGGATCAGAGGCGTCAAGTATTTGGTGATGATGCCAAATTCTTGGTTGAGGTGAAATCTGGTCAAGTTGAGGCAAATTTGAATCCAGACCAGGAGCTTAGAAGGTTGAAACACACGTTTGAAGCTTGGAAGAAAGATTATGCAGCAAGACTACGTGAAACAAAAGCAATTTTACATAAGCTTGGGAGTGAAGAAGGTGCAATGGACAAAGTGAAGAAAAGGTGGTGGGGAAGAAGGAACAGTACGAGGTTTAGTTGA 3522 0.4168 MSQISGLRPAFQPLEALQPSAKFTADPALAFVKKHENGSLGREVSEEVQDPAGDMDLFDEDSPYGGRTTTLESRPSASDDGTESAPQPLPSISPSSSDHWWSDTTPYVSKKKIHSWFQLPNGNWELGKIISTSGTESDITLPDGKVLKVKAEGLVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNRNMIYTKAGPVLVAINPFKKVPLYGNDYIKGYKNKAMESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPPSLREKLNLQSAEEYRYLRQSNCFSITGVNDGEEFRIVMEALDVVHISKENQENVFAMLAAVLWLGNISFTVIDNENHVQPVEDEGLFNVAKLIGCDIEDLKLTLSTRKMKVGNDIIVQKLTLSQAIDARDALAKSIYASLFDWLVEQINNSLAVGKKRTGRSISILDIYGFESFERNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLRQHLNSNSCFQGERGKAFAVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCTCHLPKQFAAHMLLQSEKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLENVASQDPLSVSVAILHQFSILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGHQARCYHRELRRGITTLQSFIRGEKTRNEYAASLRRHRAAVVIQKQMKVVFARRRMKNICNASIVIQSAIRGSLARRCSGDMGLLKSIGMKTNDSDEVLVKTSFLTELQRRVLKAEAALRVKKEENDILHQRLQQYESRWSEYESKMKSMEEGWQKQMRSLQSSLSIAKKSLAIDDSARNSDASVNASDDRDYSSDIGSHHRRQESSSSVGNYHRRQESNGFRPVGAGLNVISGLAHELDQRRQVFGDDAKFLVEVKSGQVEANLNPDQELRRLKHTFEAWKKDYAARLRETKAILHKLGSEEGAMDKVKKRWWGRRNSTRFS 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01948 1173 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 110 159 IPR004009 GO:0003774|GO:0005524|GO:0016459
Accr10g01948 1173 MobiDBLite consensus disorder prediction 1043 1059 - -
Accr10g01948 1173 Gene3D - 839 887 - -
Accr10g01948 1173 Gene3D - 888 931 - -
Accr10g01948 1173 FunFam Myosin heavy chain 345 401 - -
Accr10g01948 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 881 IPR027417 -
Accr10g01948 1173 ProSiteProfiles IQ motif profile. 839 866 IPR000048 GO:0005515
Accr10g01948 1173 Gene3D - 533 725 - -
Accr10g01948 1173 ProSiteProfiles Myosin motor domain profile. 163 835 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr10g01948 1173 MobiDBLite consensus disorder prediction 1028 1042 - -
Accr10g01948 1173 Gene3D Kinesin motor domain 162 768 IPR036961 -
Accr10g01948 1173 MobiDBLite consensus disorder prediction 66 100 - -
Accr10g01948 1173 PANTHER MYOSIN 156 1169 - -
Accr10g01948 1173 Coils Coil 955 1003 - -
Accr10g01948 1173 ProSiteProfiles IQ motif profile. 860 889 IPR000048 GO:0005515
Accr10g01948 1173 Pfam Myosin head (motor domain) 165 823 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr10g01948 1173 SMART iq_5 908 930 IPR000048 GO:0005515
Accr10g01948 1173 SMART iq_5 885 907 IPR000048 GO:0005515
Accr10g01948 1173 SMART iq_5 836 858 IPR000048 GO:0005515
Accr10g01948 1173 SMART iq_5 859 881 IPR000048 GO:0005515
Accr10g01948 1173 FunFam Unconventional myosin-XIX 533 725 - -
Accr10g01948 1173 Pfam IQ calmodulin-binding motif 861 880 IPR000048 GO:0005515
Accr10g01948 1173 Pfam IQ calmodulin-binding motif 841 858 IPR000048 GO:0005515
Accr10g01948 1173 Pfam IQ calmodulin-binding motif 912 927 IPR000048 GO:0005515
Accr10g01948 1173 MobiDBLite consensus disorder prediction 36 100 - -
Accr10g01948 1173 MobiDBLite consensus disorder prediction 1028 1071 - -
Accr10g01948 1173 PRINTS Myosin heavy chain signature 574 602 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr10g01948 1173 PRINTS Myosin heavy chain signature 521 549 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr10g01948 1173 PRINTS Myosin heavy chain signature 289 316 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr10g01948 1173 PRINTS Myosin heavy chain signature 193 212 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr10g01948 1173 PRINTS Myosin heavy chain signature 247 272 IPR001609 GO:0003774|GO:0005524|GO:0016459
Accr10g01948 1173 Gene3D - 345 401 - -
Accr10g01948 1173 Gene3D Myosin VI head, motor domain, U50 subdomain 402 510 - -
Accr10g01948 1173 CDD MYSc_Myo8 177 823 IPR036022 -
Accr10g01948 1173 Gene3D - 769 836 - -
Accr10g01948 1173 SMART MYSc_2a 157 836 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01948 Accr-Chr10 43999298 44010016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01948 7 1172 Myosins gene family AT1G50360 74.573 0.0 1778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01948 - K10357 gmx:100801124 1908.65