Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01945 ATGGCCGAATCACCCTCTCCGACGCCTGAGCAACCCTTACCGGAATCCGATGATTCGCAGTACTGGTGCTACCACTGCGACAAGCGTGTGTCCGTAGAGACGCATCCTGAGGGCCCGGACATTCTCTGCCTCGAGTGCAAGCATGGGTTCGTTGAATCGATTCCTTCGCCGTCTTTGGCTCCGCCCTCCACGACTTCTGATCTGATCGACGATCCTCATTTTGAATCGCAATTTCTGCGCGTACTTCGACTACTTGCAGAGTCTGCGCGTGATGAAGACGCGCCTCCTCCTCCTCCATCTCGAAACCGCTCCTCAGGCGATGATTTTCTCAGGGTTGAGTTCGAGGATTGGGATGACGATGAAGAAAGCAGCAACAACAATAACAACTACGAGGACGACGAAGATGATGGGGTGGAGATTCGAGATGAAGGAGAAGAGCACGAAGGTGCTGAAGAGCATGAAGATGGACTAGGAGTAGAAGACCTAAGTGGAGACGAAGCCGAAGAATATCTGAGAAGGAGGAGTATGCGGAACCGGATCAGAGACTTGACCAGTCGGATCAGAGACTTGGCAACCGGCACGAGGAGCAGGAGGAACAGGATCTTGGATTGGGCTGATATACTGATGGGTCTTGAAGACAATTCCATAGAACTAAGACTTCAAGTGCCCGATTCGGATCGATTTTTCGGAAACCCGGGAGATTACGTCGACGCTGCTGATTATGAAGCTCTGCTGATGACCTTGGCAGAAAGCGATGGAAGCGGGAGAAGAGGGGCTCCACCGGCCGCAAAATCTGCGGTGGAGTCGCTGCCGACGGTGGAAATTGTGTCTGAGGATCAAGCTTTGGTGTGTGCTATATGCAAAGATATGGTGGGTGTGGGAAGCATGGCAAAGCAATTGCCCTGCGGCCATCAGTACCATGGGGATTGCATAGTTCCCTGGTTGGGCTCCAGAAATTCATGCCCAGTGTGCAGGTTTGAGCTTCCAACGGATGACCAGGATTATGAGGAGGAGAAGAAGAAGAAGGTGATTGCCACCACTGCTGATGGGGCATCGGGTTCTGGTGGAACCGATGCGGTATCATGTTTATTCTAA 1095 0.5233 MAESPSPTPEQPLPESDDSQYWCYHCDKRVSVETHPEGPDILCLECKHGFVESIPSPSLAPPSTTSDLIDDPHFESQFLRVLRLLAESARDEDAPPPPPSRNRSSGDDFLRVEFEDWDDDEESSNNNNNYEDDEDDGVEIRDEGEEHEGAEEHEDGLGVEDLSGDEAEEYLRRRSMRNRIRDLTSRIRDLATGTRSRRNRILDWADILMGLEDNSIELRLQVPDSDRFFGNPGDYVDAADYEALLMTLAESDGSGRRGAPPAAKSAVESLPTVEIVSEDQALVCAICKDMVGVGSMAKQLPCGHQYHGDCIVPWLGSRNSCPVCRFELPTDDQDYEEEKKKKVIATTADGASGSGGTDAVSCLF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01945 364 SUPERFAMILY RING/U-box 279 331 - -
Accr10g01945 364 Pfam Ring finger domain 284 325 IPR001841 -
Accr10g01945 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 331 IPR013083 -
Accr10g01945 364 FunFam E3 ubiquitin-protein ligase RING1-like 247 331 - -
Accr10g01945 364 Pfam zinc-ribbon 20 54 IPR039525 GO:0061630
Accr10g01945 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 126 329 - -
Accr10g01945 364 MobiDBLite consensus disorder prediction 88 164 - -
Accr10g01945 364 MobiDBLite consensus disorder prediction 143 157 - -
Accr10g01945 364 ProSiteProfiles Zinc finger RING-type profile. 284 325 IPR001841 -
Accr10g01945 364 SMART ring_2 284 324 IPR001841 -
Accr10g01945 364 MobiDBLite consensus disorder prediction 112 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01945 Accr-Chr10 43961551 43962645 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01945 152 359 C3H Transcription Factor Family AT5G01980 42.593 1.54e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01945 - - pcin:129312052 598.586