Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01925 ATGGCTCAGCTAGAGTGTATATATATTAGTTCATCGGATGATGATTTGGAGCTGGAGGAGATAGAGAATCCAAATTATGGAAATCGTTCTGGTGGGCCTGCTCATGAAAGCAATGCTGGTTATGGTGGAGGACTTATACTTGATAGTTCTTTGAGACAGGCAAATACTTCAAATGCAAGCTCTTCTGGTGCTTATAATCATTCACCATCTGACCACTATGCTGAACCTGGGTCCAGCAGTTATATGCCAAATCGTGGATTTGCACATGGAGATGGATCTTTCAATATCTCACAGAATGGTTACACAAGTCAGTTTCAAGCAGTTAATTCTACAATTGCTAAATCTTCTGGTTCTGATTATGAGAAAATACCATCACAACAAGCTTTTAAGAGGACCATTTCATCGTCGCTTCTGCCAGCTGCAATGAAGCCATTTCCATCTTCTCTTCAGTCATTTGCACCAGGAAGTAGCATGAACAGTGACCAGAGCACTTTGCGTGATAACTATGGCAGGGGCAATGATGAACGTGTGATGTATCAAAATGGTGGGATTAGGATGCTTCCTCCACCTATGATTCATGGGGCAGGGGAAGAAAGGACCTCAGAAAACGTTGAGAGACTAATTTATCAGGCAGCACTGGAGGATCTCAATCAGCCAAAAGTCGAAGCTAATTTACCTGATGGTTTATTGTCTGTGTCGCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGGTTCAGAAGGAAACCAGAAGTTTGCACTGCTTGGGGGGGATTCTGGCTGATGATCAAGGCCTTGGAAAGACAATCTCGATGATTGCGCTCATACAAATGCAGAAGCAATTGCAGTCAAAATCGAAAACAGATGAGATGTCCGATCATAAAGCTGAAGCATTAAATTTGGATGAGGATGATGAAAATGATAATGCTGGTGATACTGGAAAGAATGAAGAAGATGATACAAAACCTATTCCTGAATCATCTGGTTCATCTTCCACAAGGGTGGTTGGCAGGAAAAGACCAGCTGCTGGTACACTGGTTGTTTGCCCTGCTAGTGTTCTTCGACAGTGGGCACGGGAATTGGATGACAAAGTAGGAGATGAAGCTAAGCTCTCTGTGTTGATTTATCATGGGGGTAATAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTTGTTCTCACAACTTATTCTATTGTAACTAATGAGGTTCCAAAGCAACCTTTAGTTGAAGAGGATGAAATTGATGAAAAAATGGGGGAAAGATTTGGGTTATCCTCTGAGTTTGCTTTTGGTAAAAAGAGGAAAAAGGCTTATAATAATGCAAGTAAAAAGAGTAAAAAAAGTAAAAAGGGACTTGACAGTTCTTTTGACTCTGCATCGGGTGCCCTCGCAAAAGTTGGCTGGTTCAGGGTCATTCTAGATGAAGCTCAGACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGTTTATCTGGAACACCTATTCAAAATGCTATTGAAGATCTTTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATAAAAGTGCCAATATCCAAAAATTCTATTCAAGGTTACAAGAAGCTTCAAGCTGTTCTAAGGGCTATAATGCTTCGTCGTACTAAAGGAACATTGATTGATGGACAGCCTATAATCAATCTGCCCCCTAAAACTATAACGCTGAATAAGGTGGATTTCTCCCTTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTAGTCAATTTAAGGCATACGCTGCTGCTGGTACAGTCAATCAAAATTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGATCATCCACTTCTTGTCAAAGATTATAGTTCTGATTTTGTTGGGGAAAACTCGATAGAAATGGCCAGAACGCTTCCAAAGGAAATGCTAGTTAATCTTTTCAATTGTTTGGAAGCATCCTTTGCAATTTGTAAAGTTTGCAATGATACACCTGAAGATCCAGTTGTTACCATGTGTGGCCATGTTTTCTGTTATCAGTGTGTATCCGAACATTTGACGGGTTATGAAAGTATGTGCCCAGCTGCTGATTGTAAAGAACAAATTGGTGATGATGTTGTCTTCTCCAAAGCTACATTAAGAAGTTGCATCTCTGGTGATCCTGGCGATAGTAGTTCTTCAGCTTCAGCCCTTGTTGATTATTCAGCTGTGCAGCAGAGTAGTTATAGTTCATCTAAAATCAAGGCACTCCTTGAGATTCTGGAGCTACATTGTTGCTCTGGTCGTGCTAGAAATTCACTGCCTTCCGAAACTTCAGATATCGAAAACTTGGATTTAGATGTGATTGTTACAGGGGACACAAGAAAATGTTCAGAGGGCACAATTGATGGACCAATAAAGGCTATTGTTTTTTCTCAGTGGACCAGCATGTTGGACTTAGTCGAAGATTCGCTGAAGGACTCTGGCATTCGACACAGGAGACTTGATGGTACCATGACACTCACTGCGAGGGATAAGTCTGTCAAGGATTTCAATACTAATCCTGAGGTAACTGTCTTGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAACTTGGTTGCTGCTTGCCATGTTATTCTCTTAGATCTTTGGTGGAATCCAACAACCGAAGAACAAGCTATTGATCGAGCTCACAGGATCGGACAGACGCGTCCTGTTACTGTGACACGGCTCACCATAAGAGATACGGTTGAAGATAGAATCTTGGCTCTCCAGGAAGACAAGAAAAAGATGGTAGCGTCTGCTTTTGGTGAAGATCATGCGGGCGGGACGGCAACTCGCCTAACAGTGGACGACCTAAAATATCTTTTCATGGTGTGA 2925 0.4157 MAQLECIYISSSDDDLELEEIENPNYGNRSGGPAHESNAGYGGGLILDSSLRQANTSNASSSGAYNHSPSDHYAEPGSSSYMPNRGFAHGDGSFNISQNGYTSQFQAVNSTIAKSSGSDYEKIPSQQAFKRTISSSLLPAAMKPFPSSLQSFAPGSSMNSDQSTLRDNYGRGNDERVMYQNGGIRMLPPPMIHGAGEERTSENVERLIYQAALEDLNQPKVEANLPDGLLSVSLLRHQKIALAWMVQKETRSLHCLGGILADDQGLGKTISMIALIQMQKQLQSKSKTDEMSDHKAEALNLDEDDENDNAGDTGKNEEDDTKPIPESSGSSSTRVVGRKRPAAGTLVVCPASVLRQWARELDDKVGDEAKLSVLIYHGGNRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEEDEIDEKMGERFGLSSEFAFGKKRKKAYNNASKKSKKSKKGLDSSFDSASGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIEDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGQPIINLPPKTITLNKVDFSLEERAFYTKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYSSDFVGENSIEMARTLPKEMLVNLFNCLEASFAICKVCNDTPEDPVVTMCGHVFCYQCVSEHLTGYESMCPAADCKEQIGDDVVFSKATLRSCISGDPGDSSSSASALVDYSAVQQSSYSSSKIKALLEILELHCCSGRARNSLPSETSDIENLDLDVIVTGDTRKCSEGTIDGPIKAIVFSQWTSMLDLVEDSLKDSGIRHRRLDGTMTLTARDKSVKDFNTNPEVTVLLMSLKAGNLGLNLVAACHVILLDLWWNPTTEEQAIDRAHRIGQTRPVTVTRLTIRDTVEDRILALQEDKKKMVASAFGEDHAGGTATRLTVDDLKYLFMV 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01925 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 563 IPR027417 -
Accr10g01925 974 ProSitePatterns Zinc finger RING-type signature. 694 703 IPR017907 -
Accr10g01925 974 SMART helicmild6 833 916 IPR001650 -
Accr10g01925 974 Gene3D - 428 575 IPR038718 -
Accr10g01925 974 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 673 729 IPR013083 -
Accr10g01925 974 MobiDBLite consensus disorder prediction 49 77 - -
Accr10g01925 974 Pfam SNF2-related domain 241 640 IPR000330 GO:0005524|GO:0140658
Accr10g01925 974 CDD DEXDc_SHPRH-like 234 563 - -
Accr10g01925 974 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 325 414 - -
Accr10g01925 974 SMART ultradead3 230 542 IPR014001 -
Accr10g01925 974 SMART ring_2 679 717 IPR001841 -
Accr10g01925 974 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 249 525 IPR014001 -
Accr10g01925 974 Gene3D - 330 418 IPR038718 -
Accr10g01925 974 MobiDBLite consensus disorder prediction 151 167 - -
Accr10g01925 974 SUPERFAMILY RING/U-box 676 725 - -
Accr10g01925 974 CDD SF2_C_SNF 816 926 - -
Accr10g01925 974 ProSiteProfiles Zinc finger RING-type profile. 679 715 IPR001841 -
Accr10g01925 974 Gene3D - 203 297 IPR038718 -
Accr10g01925 974 Pfam Zinc finger, C3HC4 type (RING finger) 679 715 IPR018957 GO:0046872
Accr10g01925 974 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 799 969 IPR001650 -
Accr10g01925 974 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 80 973 - -
Accr10g01925 974 MobiDBLite consensus disorder prediction 285 338 - -
Accr10g01925 974 MobiDBLite consensus disorder prediction 151 171 - -
Accr10g01925 974 Gene3D - 578 973 IPR027417 -
Accr10g01925 974 MobiDBLite consensus disorder prediction 286 301 - -
Accr10g01925 974 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 444 575 - -
Accr10g01925 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 973 IPR027417 -
Accr10g01925 974 MobiDBLite consensus disorder prediction 22 86 - -
Accr10g01925 974 Pfam Helicase conserved C-terminal domain 821 916 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01925 Accr-Chr10 43798622 43803777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01925 11 874 RAD5 or RAD16-like Gene Family AT1G50410 56.084 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr10g01925 SNF2_N 3.3e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01925 - - qsa:O6P43_032256 1278.85