Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01924 ATGCCCCACAATTTGGATCATGTCGTTGAATTCCTAAACTCAACTTGGAGAGTTTGTTCTCTGGAAAGAGAAGGTTATTCAGATTTCATGGCTCAACTAGACTCTATATATATCAGTTCATCAGATGATGACCTGGATTTGGACCTGGACCTGGACGAGACAGAAACCTCTAATTATAGGCACCTCCCAGCATGGGCTGCTAGAGGAAGTAATGCTGGCTATGGTGGAGGGCATGAGCAGGATATTTCTTCTAAATGGGAAAATACTTCGAATGCAAGCTCTTCGAGAGCTTATAATCATTCACAAGTCAAGCACAGTACTAAACCTTGGTCTAGCAACAATGTGCTGAATCACAGAGTAGCACAAAGAGATGAATCTTTCAATTTTTCAGAGAGCAGTAAAGCAAATCAGCATCAGACGGTCAGTTCACGAATTGCTAATACTGGTGCTGATTATGGGAGAATACCATCCCATCAAGAATCAAGGAGGATCCTTCCACCATATCTTCAGCCATCTACTGAAAAGCCTCTTCCATCTCCTCTCAAGTCATTTTCTTCGGACATTAGGTTGAACAGTTCAAAAGATAATTTGAGCAGAAGTGAGATTCATGATACCCTTGGGAATCATCATAATGGTGCAATTAGGATTCTTCCCCCAACTTTGATGCATGGGAAAAACCTCCCTTCTATGCATTTACCTAGTTCGAGTGAATCTACATATCATTCTGGAGCTGGTGAAGAAAGGGCTTCTGAAACTGATGAAAGGCTAATTTATCAGGCAGCATTGGAGGACCTCAATCAGCCAAAGGTTGAAGCTGCTTTACCTGATGGTTTATTGTCTGTATCACTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAGGAGCTTGCATTGCTTGGGAGGAATTCTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGATCATTGCAGTCACAATCAAAAACAGATGAGATGCACTATCACAAAGCTGAAGCATTAAATTTGGATGAGGATGATGACAATGATAAGGGCAATGGTACTGTAGGACAATCTAAAAAGAACAAAGAAATTGGTGATAGAAAACCTTCTAAATCAGTTAGATCGTCTTCAACACAGGTGCTTGGTAGGAAACGGCCAGCTGCTGGCACACTGGTGGTCTGCCCTGCTAGTGTTCTACGACAGTGGGCGAGGGAACTGGAAGACAAAGTTGGAGATGAAGCTAAGCTCTCTGTGTTGTTTTATCATGGGTGTAATAGGACAAAGGATCCTGTTGAACTTGCTGATTATGATGTTGTTCTCACAACATATTCTATTGTGACTACTGAAGTTCCAAAGCAACCTTTAGTGGAAGAGGATGAAATTGATGGGAAAAATGAGGAAAGATTTGGGTCATCCTCTGAATTTGCTTTTGGTAATAAGAGGAAAAAGACTTATAATGAAAGTAAAAGGGGTAAAAAGGGTAAAAAGGGAATTGGCAGTTCTTTTGATTGTGCTTCTGGCCCTCTTGCCCAAGTGGCTTGGTTTAGGGTTATCCTAGATGAAGCTCAAGTGATAAAAAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGTTTATCTGGTACACCGATTCAAAATACTATAGATGATTTGTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGAATACAAGTCTTTCTACAATACAATAAAGGTACCGATATCCAAAAATACTATCCAGGGTTACAAGAAACTTCAGGCGGTTCTGAGGGCTATAATGCTACGTCGAACAAAAGGAACATTGATTGACGGGGAGCCTATTGTTAATCTGCCCCCTAAAACAATTCAGCTGCATAAGGTGGATTTCTCCATTGAGGAGCGTGCCTTCTACACCAAGTTGGAAGCTGATTCACGAACCCAATTTAAGGCATATGCTGCTGCTGGTACAGTCAAGCAAAATTATGCGAATATTCTTTCAATGATTTTACGCCTCCGTCAAGCTTGTGACCACCCATTTCTTGTTAAAGATAATTGTTCTGATGTCGTTGGGGGAATTTCAGTTGAAATGGCAAAGATGCTTCCAAGGGAGATGCTGATTAATCTCTTTAATTGCTTGGAAACATCCTTTGCCATATGTGGTGTTTGCAGTGATCCACCTGAAAATCCAGTTGTTACAATGTGTGGTCATGTTTTCTGTTATCAGTGTGTATCAGAATTTTTGACGGGTTATGATAATATCTGCCCTGCAGTTGAGTGCAACGAAAAAATTGGTGATGATGTTGTTTTCTCCAAGTCTACTTTAAGAAGTGGCATCTCTGGTGCCCTTGGTGATGCTAATTCTGCAAGTTATCAAAATGTTGATTTTTCGGTACTACAGCAGAGAAATTACTGTTCATCTAAAATCAAAGCAGTCCTTGAGATTCTGCAGTCATATTGTAAATTAAAGAATCCAGGTTCTGACGGATTGAGTTCCTCAGGATGCAGTAGAAATTCATCTCCTGAAACTTCAGACGATGAAGATTTCTATTCAGAAGTTCATCCTACAAAATACGCAGGAAAAGATTCAGAGTGCTCAACTGAAGGACCGGTAAAGGCTATCGTATTTTCCCAGTGGAATAGCATGTTGGACTTAGTTGAACATGCACTGGAAGAGTTCTCTATCACTTACAGGAGACTTGACGGCACAATGACGCTGGTTGCAAGGGACAATGCTGTTGAAGATTTTAATACTGATCCTGAGGTAATTGTCATGCTGATGTCTCTAAAAGCAGGAAACCTCGGTTTAAATATGGCTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAACCCAACAACTGAAGATCAAGCTGTTGATCGAGCTCATAGAATTGGACAGATCCGTCCTGTTACTGTGACAAGGCTTACCATAAAAGATACCGTTGAGGATAGAATACTGGCTCTCCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGATCAGGGCGGCGCTTCTGGAACTCGCCTTACAGTGGACGATCTAAAATATCTTTTCATGGTCTAA 3111 0.4118 MPHNLDHVVEFLNSTWRVCSLEREGYSDFMAQLDSIYISSSDDDLDLDLDLDETETSNYRHLPAWAARGSNAGYGGGHEQDISSKWENTSNASSSRAYNHSQVKHSTKPWSSNNVLNHRVAQRDESFNFSESSKANQHQTVSSRIANTGADYGRIPSHQESRRILPPYLQPSTEKPLPSPLKSFSSDIRLNSSKDNLSRSEIHDTLGNHHNGAIRILPPTLMHGKNLPSMHLPSSSESTYHSGAGEERASETDERLIYQAALEDLNQPKVEAALPDGLLSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALIQMQRSLQSQSKTDEMHYHKAEALNLDEDDDNDKGNGTVGQSKKNKEIGDRKPSKSVRSSSTQVLGRKRPAAGTLVVCPASVLRQWARELEDKVGDEAKLSVLFYHGCNRTKDPVELADYDVVLTTYSIVTTEVPKQPLVEEDEIDGKNEERFGSSSEFAFGNKRKKTYNESKRGKKGKKGIGSSFDCASGPLAQVAWFRVILDEAQVIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAEYKSFYNTIKVPISKNTIQGYKKLQAVLRAIMLRRTKGTLIDGEPIVNLPPKTIQLHKVDFSIEERAFYTKLEADSRTQFKAYAAAGTVKQNYANILSMILRLRQACDHPFLVKDNCSDVVGGISVEMAKMLPREMLINLFNCLETSFAICGVCSDPPENPVVTMCGHVFCYQCVSEFLTGYDNICPAVECNEKIGDDVVFSKSTLRSGISGALGDANSASYQNVDFSVLQQRNYCSSKIKAVLEILQSYCKLKNPGSDGLSSSGCSRNSSPETSDDEDFYSEVHPTKYAGKDSECSTEGPVKAIVFSQWNSMLDLVEHALEEFSITYRRLDGTMTLVARDNAVEDFNTDPEVIVMLMSLKAGNLGLNMAAACHVILLDLWWNPTTEDQAVDRAHRIGQIRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEDQGGASGTRLTVDDLKYLFMV 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01924 1036 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 96 1035 - -
Accr10g01924 1036 Gene3D - 379 470 IPR038718 -
Accr10g01924 1036 MobiDBLite consensus disorder prediction 347 361 - -
Accr10g01924 1036 ProSiteProfiles Zinc finger RING-type profile. 731 767 IPR001841 -
Accr10g01924 1036 MobiDBLite consensus disorder prediction 347 390 - -
Accr10g01924 1036 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 615 IPR027417 -
Accr10g01924 1036 MobiDBLite consensus disorder prediction 836 851 - -
Accr10g01924 1036 SMART ring_2 731 769 IPR001841 -
Accr10g01924 1036 CDD DEXDc_SHPRH-like 283 615 - -
Accr10g01924 1036 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 577 IPR014001 -
Accr10g01924 1036 Gene3D - 479 626 IPR038718 -
Accr10g01924 1036 Pfam Zinc finger, C3HC4 type (RING finger) 731 767 - -
Accr10g01924 1036 SUPERFAMILY RING/U-box 727 776 - -
Accr10g01924 1036 MobiDBLite consensus disorder prediction 82 147 - -
Accr10g01924 1036 Pfam Helicase conserved C-terminal domain 881 978 IPR001650 -
Accr10g01924 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 725 781 IPR013083 -
Accr10g01924 1036 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 496 627 - -
Accr10g01924 1036 SMART ultradead3 279 594 IPR014001 -
Accr10g01924 1036 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 1035 IPR027417 -
Accr10g01924 1036 CDD SF2_C_SNF 883 988 - -
Accr10g01924 1036 MobiDBLite consensus disorder prediction 229 243 - -
Accr10g01924 1036 MobiDBLite consensus disorder prediction 224 252 - -
Accr10g01924 1036 Gene3D - 630 1035 IPR027417 -
Accr10g01924 1036 MobiDBLite consensus disorder prediction 71 188 - -
Accr10g01924 1036 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 378 467 - -
Accr10g01924 1036 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 856 1031 IPR001650 -
Accr10g01924 1036 MobiDBLite consensus disorder prediction 836 862 - -
Accr10g01924 1036 SMART helicmild6 895 978 IPR001650 -
Accr10g01924 1036 Gene3D - 251 345 IPR038718 -
Accr10g01924 1036 Pfam SNF2-related domain 286 692 IPR000330 GO:0005524|GO:0140658
Accr10g01924 1036 ProSitePatterns Zinc finger RING-type signature. 746 755 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01924 Accr-Chr10 43785065 43792551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01924 44 936 RAD5 or RAD16-like Gene Family AT1G50410 53.465 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr10g01924 SNF2_N 1.8e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01924 - - gmx:100795142 1311.59