Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01923 ATGCCCCACAATTTGGATCATGTCGTTGAATTCCTAAACTCAACTTGGAGAGTTTGTTCTCTGGTACGTGGTTGGGTTTCTAGCTTAATATCACAACCCTATAGAGACGTGGAAAGAGAAGGTTATTCAGATTTCATGGCTCAACTAGACTCTATATATATCAGTTCATCAGATGATGACCTGGATTTGGACCTGGACCTGGACGAGACAGAAACCTCTAATTATAGGCACCTCCCAGCATGGGCTGCTAGAGGAAGTAATGCTGGCTATGGTGGAGGGCATGAGCAGGATATTTCTTCTAAATGGGAAAATACTTCGAATGCAAGCTCTTCGAGAGCTTATAATCATTCACAAGTCAAGCACAGTACTAAACCTTGGTCTAGCAACAATGTGCTGAATCACAGAGTAGCACAAAGAGATGAATCTTTCAATTTTTCAGAGAGCAGTAAAGCAAATCAGCATCAGACGGTCAGTTCACGAATTGCTAATACTGGTGCTGATTATGGGAGAATACCATCCCATCAAGAATCAAGGAGGATCCTTCCACCATATCTTCAGCCATCTACTGAAAAGCCTCTTCCATCTCCTCTCAAGTCATTTTCTTCGGACATTAGGTTGAACAGTTCAAAAGATAATTTGAGCAGAAGTGAGATTCATGATACCCTTGGGAATCATCATAATGGTGCAATTAGGATTCTTCCCCCAACTTTGATGCATGGGAAAAACCTCCCTTCTATGCATTTACCTAGTTCGAGTGAATCTACATATCATTCTGGAGCTGGTGAAGAAAGGGCTTCTGAAACTGATGAAAGGCTAATTTATCAGGCAGCATTGGAGGACCTCAATCAGCCAAAGGTTGAAGCTGCTTTACCTGATGGTTTATTGTCTGTATCACTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAGGAGCTTGCATTGCTTGGGAGGAATTCTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGATCATTGCAGTCACAATCAAAAACAGATGAGATGCACTATCACAAAGCTGAAGCATTAAATTTGGATGAGGATGATGACAATGATAAGGGCAATGGTACTGTAGGACAATCTAAAAAGAACAAAGAAATTGGTGATAGAAAACCTTCTAAATCAGTTAGATCGTCTTCAACACAGGTGCTTGGTAGGAAACGGCCAGCTGCTGGCACACTGGTGGTCTGCCCTGCTAGTGTTCTACGACAGTGGGCGAGGGAACTGGAAGACAAAGTTGGAGATGAAGCTAAGCTCTCTGTGTTGTTTTATCATGGGTGTAATAGGACAAAGGATCCTGTTGAACTTGCTGATTATGATGTTGTTCTCACAACATATTCTATTGTGACTACTGAAGTTCCAAAGCAACCTTTAGTGGAAGAGGATGAAATTGATGGGAAAAATGAGGAAAGATTTGGGTCATCCTCTGAATTTGCTTTTGGTAATAAGAGGAAAAAGACTTATAATGAAAGTAAAAGGGGTAAAAAGGGTAAAAAGGGAATTGGCAGTTCTTTTGATTGTGCTTCTGGCCCTCTTGCCCAAGTGGCTTGGTTTAGGGTTATCCTAGATGAAGCTCAAGTGATAAAAAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGTTTATCTGGTACACCGATTCAAAATACTATAGATGATTTGTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGAATACAAGTCTTTCTACAATACAATAAAGGTACCGATATCCAAAAATACTATCCAGGGTTACAAGAAACTTCAGGCGGTTCTGAGGGCTATAATGCTACGTCGAACAAAAGGAACATTGATTGACGGGGAGCCTATTGTTAATCTGCCCCCTAAAACAATTCAGCTGCATAAGGTGGATTTCTCCATTGAGGAGCGTGCCTTCTACACCAAGTTGGAAGCTGATTCACGAACCCAATTTAAGGCATATGCTGCTGCTGGTACAGTCAAGCAAAATTATGCGAATATTCTTTCAATGATTTTACGCCTCCGTCAAGCTTGTGACCACCCATTTCTTGTTAAAGATAATTGTTCTGATGTCGTTGGGGGAATTTCAGTTGAAATGGCAAAGATGCTTCCAAGGGAGATGCTGATTAATCTCTTTAATTGCTTGGAAACATCCTTTGCCATATGTGGTGTTTGCAGTGATCCACCTGAAAATCCAGTTGTTACAATGTGTGGTCATGTTTTCTGTTATCAGTGTGTATCAGAATTTTTGACGGGTTATGATAATATCTGCCCTGCAGTTGAGTGCAACGAAAAAATTGGTGATGATGTTGTTTTCTCCAAGTCTACTTTAAGAAGTGGCATCTCTGGTGCCCTTGGTGATGCTAATTCTGCAAGTTATCAAAATGTTGATTTTTCGGTACTACAGCAGAGAAATTACTGTTCATCTAAAATCAAAGCAGTCCTTGAGATTCTGCAGTCATATTGTAAATTAAAGAATCCAGGTTCTGACGGATTGAGTTCCTCAGGATGCAGTAGAAATTCATCTCCTGAAACTTCAGACGATGAAGATTTCTATTCAGAAGTTCATCCTACAAAATACGCAGGAAAAGATTCAGAGTGCTCAACTGAAGGACCGGTAAAGGCTATCGTATTTTCCCAGTGGAATAGCATGTTGGACTTAGTTGAACATGCACTGGAAGAGTTCTCTATCACTTACAGGAGACTTGACGGCACAATGACGCTGGTTGCAAGGGACAATGCTGTTGAAGATTTTAATACTGATCCTGAGGTAATTGTCATGCTGATGTCTCTAAAAGCAGGAAACCTCGGTTTAAATATGGCTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAACCCAACAACTGAAGATCAAGCTGTTGATCGAGCTCATAGAATTGGACAGATCCGTCCTGTTACTGTGACAAGGCTTACCATAAAAGATACCGTTGAGGATAGAATACTGGCTCTCCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGATCAGGGCGGCGCTTCTGGAACTCGCCTTACAGTGGACGATCTAAAATATCTTTTCATGGTCTAA 3159 0.4122 MPHNLDHVVEFLNSTWRVCSLVRGWVSSLISQPYRDVEREGYSDFMAQLDSIYISSSDDDLDLDLDLDETETSNYRHLPAWAARGSNAGYGGGHEQDISSKWENTSNASSSRAYNHSQVKHSTKPWSSNNVLNHRVAQRDESFNFSESSKANQHQTVSSRIANTGADYGRIPSHQESRRILPPYLQPSTEKPLPSPLKSFSSDIRLNSSKDNLSRSEIHDTLGNHHNGAIRILPPTLMHGKNLPSMHLPSSSESTYHSGAGEERASETDERLIYQAALEDLNQPKVEAALPDGLLSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALIQMQRSLQSQSKTDEMHYHKAEALNLDEDDDNDKGNGTVGQSKKNKEIGDRKPSKSVRSSSTQVLGRKRPAAGTLVVCPASVLRQWARELEDKVGDEAKLSVLFYHGCNRTKDPVELADYDVVLTTYSIVTTEVPKQPLVEEDEIDGKNEERFGSSSEFAFGNKRKKTYNESKRGKKGKKGIGSSFDCASGPLAQVAWFRVILDEAQVIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAEYKSFYNTIKVPISKNTIQGYKKLQAVLRAIMLRRTKGTLIDGEPIVNLPPKTIQLHKVDFSIEERAFYTKLEADSRTQFKAYAAAGTVKQNYANILSMILRLRQACDHPFLVKDNCSDVVGGISVEMAKMLPREMLINLFNCLETSFAICGVCSDPPENPVVTMCGHVFCYQCVSEFLTGYDNICPAVECNEKIGDDVVFSKSTLRSGISGALGDANSASYQNVDFSVLQQRNYCSSKIKAVLEILQSYCKLKNPGSDGLSSSGCSRNSSPETSDDEDFYSEVHPTKYAGKDSECSTEGPVKAIVFSQWNSMLDLVEHALEEFSITYRRLDGTMTLVARDNAVEDFNTDPEVIVMLMSLKAGNLGLNMAAACHVILLDLWWNPTTEDQAVDRAHRIGQIRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEDQGGASGTRLTVDDLKYLFMV 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01923 1052 MobiDBLite consensus disorder prediction 242 268 - -
Accr10g01923 1052 ProSitePatterns Zinc finger RING-type signature. 762 771 IPR017907 -
Accr10g01923 1052 MobiDBLite consensus disorder prediction 363 377 - -
Accr10g01923 1052 SUPERFAMILY RING/U-box 743 792 - -
Accr10g01923 1052 MobiDBLite consensus disorder prediction 852 867 - -
Accr10g01923 1052 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 394 483 - -
Accr10g01923 1052 SMART ultradead3 295 610 IPR014001 -
Accr10g01923 1052 Pfam Helicase conserved C-terminal domain 897 994 IPR001650 -
Accr10g01923 1052 Gene3D - 267 361 IPR038718 -
Accr10g01923 1052 MobiDBLite consensus disorder prediction 363 406 - -
Accr10g01923 1052 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 512 643 - -
Accr10g01923 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 1051 IPR027417 -
Accr10g01923 1052 CDD DEXDc_SHPRH-like 299 631 - -
Accr10g01923 1052 SMART helicmild6 911 994 IPR001650 -
Accr10g01923 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 631 IPR027417 -
Accr10g01923 1052 SMART ring_2 747 785 IPR001841 -
Accr10g01923 1052 MobiDBLite consensus disorder prediction 98 163 - -
Accr10g01923 1052 Gene3D - 495 642 IPR038718 -
Accr10g01923 1052 Pfam Zinc finger, C3HC4 type (RING finger) 747 783 - -
Accr10g01923 1052 Pfam SNF2-related domain 302 708 IPR000330 GO:0005524|GO:0140658
Accr10g01923 1052 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 872 1047 IPR001650 -
Accr10g01923 1052 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 741 797 IPR013083 -
Accr10g01923 1052 Gene3D - 395 486 IPR038718 -
Accr10g01923 1052 ProSiteProfiles Zinc finger RING-type profile. 747 783 IPR001841 -
Accr10g01923 1052 CDD SF2_C_SNF 899 1004 - -
Accr10g01923 1052 MobiDBLite consensus disorder prediction 245 259 - -
Accr10g01923 1052 MobiDBLite consensus disorder prediction 87 204 - -
Accr10g01923 1052 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 314 593 IPR014001 -
Accr10g01923 1052 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 111 1051 - -
Accr10g01923 1052 Gene3D - 646 1051 IPR027417 -
Accr10g01923 1052 MobiDBLite consensus disorder prediction 852 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01923 Accr-Chr10 43785065 43792551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01923 60 952 RAD5 or RAD16-like Gene Family AT1G50410 53.465 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr10g01923 SNF2_N 1.8e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01923 - - gmx:100795142 1311.59