Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01920 ATGGCGGGTGGAAAATCAACCAAGTCGAACCCATCACAGGCTAGAAAGAGAGTTGATGCAGTCGATTCTCATGCTGCTACTGGTCTTGTTCGCGCCAAAGATGGCAGTGCTTTTGCCAAATGTGAAGAGTGCAACAAGAATGTTCCAGTGGCCCTCATCAGCATGCACAGTTGCAGCCTTGATGCTAAAATTAAAATGAATCTGGAGGCTCAGGTTGTGGAAAGGCCTGCTGAGGACAAGAAGCCAGCGGAGAGGAGGAAGCCCAAATCAAGCGAGCCCAAGGCTAAAAAGGCCAAGGTGGAGAGAGTGGAGAAGGGGAAGAAAGGCAAGGATCCTAACAAGCCCAAGCGTCCTCCCACAGCCTTCTTTGTCTTCCTGGAAGAGTTTAGAAAATCTTTTAAGGAGGCTAATCCTGATTCTAAAGATGTTAAAAGGGTCGGTAAAGAGGCAGGTGAGAAGTGGAAATCCTTATCTGATGAGGAGAAGAAGCCTTACTTGGATAGAGCTGCTGAACTCAAGGCAGAATATGAGAAAGCATTAGAAAGTTATAATGCTGCAGAAGACGGAGATGATCAAGAGGGTTCTGATAAAGAAAATGTAGCTGAGGAGGCGGGTCAGGAGGAATCTGAGAAGGATGACGCAACAAAGGAAAATGAAGAACTCACTGATGAGGAGTAG 678 0.4676 MAGGKSTKSNPSQARKRVDAVDSHAATGLVRAKDGSAFAKCEECNKNVPVALISMHSCSLDAKIKMNLEAQVVERPAEDKKPAERRKPKSSEPKAKKAKVERVEKGKKGKDPNKPKRPPTAFFVFLEEFRKSFKEANPDSKDVKRVGKEAGEKWKSLSDEEKKPYLDRAAELKAEYEKALESYNAAEDGDDQEGSDKENVAEEAGQEESEKDDATKENEELTDEE 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01920 225 Coils Coil 197 224 - -
Accr10g01920 225 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 14 216 - -
Accr10g01920 225 CDD HMG-box_AtHMGB1-like 116 176 - -
Accr10g01920 225 Pfam HMG (high mobility group) box 115 184 IPR009071 -
Accr10g01920 225 MobiDBLite consensus disorder prediction 180 225 - -
Accr10g01920 225 SMART hmgende2 114 185 IPR009071 -
Accr10g01920 225 MobiDBLite consensus disorder prediction 1 24 - -
Accr10g01920 225 SUPERFAMILY HMG-box 106 185 IPR036910 -
Accr10g01920 225 MobiDBLite consensus disorder prediction 73 120 - -
Accr10g01920 225 MobiDBLite consensus disorder prediction 73 115 - -
Accr10g01920 225 Gene3D High mobility group box domain 98 198 IPR036910 -
Accr10g01920 225 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 115 184 IPR009071 -
Accr10g01920 225 Coils Coil 166 189 - -
Accr10g01920 225 MobiDBLite consensus disorder prediction 198 216 - -
Accr10g01920 225 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01920 Accr-Chr10 43764245 43765971 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Accr10g01920 HMG_box 1.1e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01920 K25507 - gmx:100810345 274.248