Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01913 ATGCTAGACACTAGTGCTAATTCTTCTGATGCGGCTTCCTCAGAAAATAATGGAGTGATCCATCCCAAAAGAAAAAGAAGACCCCCAGGCACACCAGATCCAGATGCAGAGGTGGTGTGTTTGTCGCCAAGGACTTTGTTGGAATCAGACAGATATGTGTGTGAGATCTGTAACCAAGGGTTTCAAAGAGACCAGAATCTTCAGATGCATAGAAGAAGACACAAAGTACCATGGAAATTGCTGAAAAGGGAGAGCACTAATACGCAAGAGGTGAAGAAGAAGGTGTTTGTGTGCCCTGAGCCTACTTGTTTGCATCACAATCCTTGCCATGCTCTTGGAGATCTTGTAGGCATCAAGAAGCATTTTAGGAGGAAGCACAGTAATCACAAGCAGTGGGTTTGTGATAAGTGTTCTAAAGGTTATGCCGTTCAGTCTGATTACAAAGCTCACCTCAAAACCTGCGGTACCAGAGGCCATTCTTGTGACTGTGGTCGTGTCTTTTCCAGGGTTGAGAGTTTCATAGAACATCAAGACGCGTGCACTGTACGAACAGCTTCAAGCACTAGTCCATCTAGTGATCATCAGGCCAATTTAGTTCCATTAATGCAAGGCTTGCCAGTGCCAAAAGTACCACCTCCATTGTTAACCTCCGACTTGCAAAACAATAATAAGCCTCCCTACACCCCTACTTCTCATAATAAGAGACATAACATTCTAGAAGAACTCCAGCTCCTACGTTGTTCTTCTTCATCAGACGCTGGAGGAAACCGAGGTTCTTCTTCTGATCATCATGAGGAGGATAACAACAACAACTACGAAACTGATCAAACCCATCTGAAGCTTTCAATAGGGTCATGCAGTAACAATAACAATAACAAAAACAAGAATGTGTTATTGTTGAAAGAGTGTGCGAGTGAAGAGCTAAAGTTGGCTGTGGCTGAGAAGGCTTATGCCGAAGAAGCAAGAAGAGAGGCGAAGAGAGAGATAGAGATGGCTGAGATTGAGTTTGGGAGAGCAAAGAGGATAAGGAAGGAAGCTCAGGAGGAGCTTGAGAAAGCTGAGGCATTGAAGAAGCAAGCCATGATGAAGATGAGTTCTACTCTTCTGCAAATTACTTGTCACGCTTGTAAGCAACAGTTCCAATCCTCCATTTTTGCTGGGGTTTCATCAGAAGAGACATCTCTTGCTATGAGCTGCATGTCGTCCCCCACCACTGAAGGTGAAGGAGATCAATAA 1236 0.4417 MLDTSANSSDAASSENNGVIHPKRKRRPPGTPDPDAEVVCLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESTNTQEVKKKVFVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRTASSTSPSSDHQANLVPLMQGLPVPKVPPPLLTSDLQNNNKPPYTPTSHNKRHNILEELQLLRCSSSSDAGGNRGSSSDHHEEDNNNNYETDQTHLKLSIGSCSNNNNNKNKNVLLLKECASEELKLAVAEKAYAEEARREAKREIEMAEIEFGRAKRIRKEAQEELEKAEALKKQAMMKMSSTLLQITCHACKQQFQSSIFAGVSSEETSLAMSCMSSPTTEGEGDQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01913 411 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Accr10g01913 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Accr10g01913 411 MobiDBLite consensus disorder prediction 1 37 - -
Accr10g01913 411 MobiDBLite consensus disorder prediction 249 272 - -
Accr10g01913 411 Gene3D Classic Zinc Finger 117 196 - -
Accr10g01913 411 MobiDBLite consensus disorder prediction 258 272 - -
Accr10g01913 411 SUPERFAMILY beta-beta-alpha zinc fingers 51 152 IPR036236 -
Accr10g01913 411 SMART c2h2final6 52 74 IPR013087 -
Accr10g01913 411 SMART c2h2final6 132 159 IPR013087 -
Accr10g01913 411 SMART c2h2final6 96 126 IPR013087 -
Accr10g01913 411 Coils Coil 308 363 - -
Accr10g01913 411 MobiDBLite consensus disorder prediction 215 233 - -
Accr10g01913 411 Gene3D Classic Zinc Finger 30 100 - -
Accr10g01913 411 MobiDBLite consensus disorder prediction 1 16 - -
Accr10g01913 411 FunFam protein indeterminate-domain 12-like 31 102 - -
Accr10g01913 411 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 374 IPR031140 -
Accr10g01913 411 MobiDBLite consensus disorder prediction 203 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01913 Accr-Chr10 43664191 43666484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01913 23 408 C2H2 Transcription Factor Family AT2G01940 56.265 1.39e-145 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr10g01913 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01913 K25871 - cpap:110823858 451.825