Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01879 ATGATTGGAGGGAAAGATCTTGCTAATGGTCTTGACCCTGATGGGGAGAACTCTCGAAGCAAGCTGTCAAAGCCCAATTTTGACCGTGGCAGGGAGAACCCTGAAGAGAAATTAGGTTGTCCAGCAAAGGGTGCGTATTTCCTGAAGAATTCAGAGGACGTCGGTGATGGAATTCTATTGAAACCCTCTAAAGTTGGGCCTTCGTGCGTACAAGAGCTGACACTCAGCTATCTTTGTGGTAAGGAGATTCCTGGTAAAAGCTTGCTGAGTTCCTTAGAAAGAGTCAGTGGCAAAGGTAAAGAAGTCATCGTCTCGGAGGATTCAAATCAGGGTGGGAAATGGGTCGAACGGGATTTTCTGAATTTGAGCGAAACCAGGGAGAATTCTTCAAAGCGATCGGTTGAAGACGTTGAAGGGGAAATTAAGGACAAGAAGCCGAAGCTGGAGACGCTTAATCTCTCTCTTGCCTTGCCTGATGTCTCCCTTTCTCTTACGGCGTCAAACGCCCTGCAAAACGGTGATCAGCCGGTGAGGCCAAAACCTAGCAAACCGTCAGCGACTACGTATTCAAATGATTATACAACGGCGTCTCTATCATACTCGTATTCCCATCCCTTCTCGCACAATCCAAGTTGCTCGCTTACCCGTAATTCTACAGATTTTGATTATTCCGTTAGCAAAGATGATCATATTTGGAACTGCGGAGAGGGGACGAATGGGTCAGTTCATAGTCGGTTCAAGCCGATGGGAGATGGGGTGGCCTTGTCTAATCATGGTGGTGGTGGGTTTAATTCGATCATGCAGGGTAATAATAGTCAGTATAAAACTACAAGTTCAGATAACCATTCTTTTTTTCCGTCGGAATTGCCTGCCAGGCCAAGATTTGAAGCTCGGTCAGGGGACTCGAGAGGAAGGAATTCTGAGAATCTGAGAGTATCGGAAGGTTTAGATAGTGACAAAGTATGGAAGCTTTCTAGACCAGAGAAAATTCTCAGACAGATCGTGTTGGAGTCTACCCCAACGATAGCTGCTCAGTTTCAAGAGCTTACAGATGAAGCGATTGCATCGACTAAGGAGTACTTAAAGAATCTCATTGAGATACCCGAGAAGAAAGAGGAATTGGCCAGCCTACAAAATCGGCTTGAGCGAAGATCTGACCTTACTAAGGAGACTCTTTCGAAGTGCCAAAAGGGCCAACTTGAGATTCTCGTTTCTATCAAGATGGGGCTTGCAAGCTTCTTATCTGGCAAAGTCCCCTTCTCTGATATGGTAGAGATTTTCTTGCATATGAGATGTAGGAATGTGAATTGTAAGAACTTGCTGCCTGTTGATGACTGTGACTGCGAGATTTGTTCTGGAAATAAGGGATTTTGTAGTTCTTGCATGTGTCCTGTGTGTCTGAACTTTGATTGTGCTAGCAACACATGCAGTTGGGTTGGTTGTGATGTCTGTTCCCACTGGTGCCATGCTGCCTGCGGCATTAAGAGGAATCTTATCAAACCTGGGCCTAGCTTAAAGGGACCATCAGGGACCACTGAGATGCAGTTTCATTGCAGTGGATGTGGACATGCTTCAGAAATGTTTGGCTTTGTTAGAGAAGTGTTCATGTGTTGTGCTAAGGATTGGGGTCTAGAAACCCTGGTGAAAGAGCTTGACTGTGTAAGGAGGATTTTCAAAGAAAGTGAAGATCGCAAAGGAAAGGAATTGCATATCAAAACTGATAACATGCTCTATAAGCTGAAAAATGAAGCGGTGTCTCCTTTGGATGCCTGCAATTACATCCTACAATTTTTCAACTATGCAGATAGCATGTCAGACTTTCCTGCTTCTGGTATGTCTTCAAAGGATTTGTCAGCATCTCAAGCTAATCTTAGGAAGGAAGCAACATCTCTTTCACAATCTAATTCTCTAATGTCAAAATATACCTATAACTCGAGCTATTCAAGGTCACAATGTGATGTTCTGTCAAATGATCTTCATCAGAAAGATCTGAAAGCTTCCATCTTAAGTGAATTAAAAAATGAGAGTGATTTCCAGCTGGGGGCTCTGATAAGAAAAGGTGGGCTTGACAACTTGGAGAGCATTGTGAGGATTAAGGAAGCGGAAGCCAGAATGTTCCAAACCAAGGCCGACGAAGCCCGGAGAGAAGCAGAAGGTTTCCAGAGGATGATAAGGATGAAAACGACGCAGATGGAAGAAGAGTATGCTGAGAGGCTTGCCAAGCTCTCTCTTCAAGAGACTGAGGAAAGTCGGAGGAAGAAATTGGAGGAATTGAAGGTCTTAGAAAATTCCCAGTGTGATTACTTTAAAATGAAAATGAGGATGCAAGCTGAGATTGCTGGTTTGTTGGAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA 2385 0.4419 MIGGKDLANGLDPDGENSRSKLSKPNFDRGRENPEEKLGCPAKGAYFLKNSEDVGDGILLKPSKVGPSCVQELTLSYLCGKEIPGKSLLSSLERVSGKGKEVIVSEDSNQGGKWVERDFLNLSETRENSSKRSVEDVEGEIKDKKPKLETLNLSLALPDVSLSLTASNALQNGDQPVRPKPSKPSATTYSNDYTTASLSYSYSHPFSHNPSCSLTRNSTDFDYSVSKDDHIWNCGEGTNGSVHSRFKPMGDGVALSNHGGGGFNSIMQGNNSQYKTTSSDNHSFFPSELPARPRFEARSGDSRGRNSENLRVSEGLDSDKVWKLSRPEKILRQIVLESTPTIAAQFQELTDEAIASTKEYLKNLIEIPEKKEELASLQNRLERRSDLTKETLSKCQKGQLEILVSIKMGLASFLSGKVPFSDMVEIFLHMRCRNVNCKNLLPVDDCDCEICSGNKGFCSSCMCPVCLNFDCASNTCSWVGCDVCSHWCHAACGIKRNLIKPGPSLKGPSGTTEMQFHCSGCGHASEMFGFVREVFMCCAKDWGLETLVKELDCVRRIFKESEDRKGKELHIKTDNMLYKLKNEAVSPLDACNYILQFFNYADSMSDFPASGMSSKDLSASQANLRKEATSLSQSNSLMSKYTYNSSYSRSQCDVLSNDLHQKDLKASILSELKNESDFQLGALIRKGGLDNLESIVRIKEAEARMFQTKADEARREAEGFQRMIRMKTTQMEEEYAERLAKLSLQETEESRRKKLEELKVLENSQCDYFKMKMRMQAEIAGLLERMEATKQQWV 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01879 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 729 751 IPR004082 -
Accr10g01879 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 690 710 IPR004082 -
Accr10g01879 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 423 444 IPR004082 -
Accr10g01879 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 469 489 IPR004082 -
Accr10g01879 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 345 367 IPR004082 -
Accr10g01879 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 384 399 IPR004082 -
Accr10g01879 794 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 542 561 IPR004082 -
Accr10g01879 794 Coils Coil 696 716 - -
Accr10g01879 794 MobiDBLite consensus disorder prediction 17 38 - -
Accr10g01879 794 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 117 793 IPR004082 -
Accr10g01879 794 MobiDBLite consensus disorder prediction 1 39 - -
Accr10g01879 794 Coils Coil 744 764 - -
Accr10g01879 794 CDD PHD_OBE1_like 462 521 IPR047578 -
Accr10g01879 794 MobiDBLite consensus disorder prediction 294 311 - -
Accr10g01879 794 Coils Coil 772 792 - -
Accr10g01879 794 MobiDBLite consensus disorder prediction 268 311 - -
Accr10g01879 794 MobiDBLite consensus disorder prediction 168 190 - -
Accr10g01879 794 MobiDBLite consensus disorder prediction 268 285 - -
Accr10g01879 794 Pfam PHD - plant homeodomain finger protein 432 556 IPR032881 -
Accr10g01879 794 Pfam Coiled-coil region of Oberon 655 783 IPR032535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01879 Accr-Chr10 43351224 43354749 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01879 363 533 PHD Gene Family AT5G57380 23.737 1.73e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01879 - - gmx:100820216 1191.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr10g01879 10 43351224 43354749 Accr10g01879 10 43351224 43354749 ECH