Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01878 ATGATGACACCAAATTTGAACTTGGAACCCGAAAATATTTCGGAAGTCAGTAGCCAAGTAGCTTCCACTATATCCTTGCAAGAAACCTCCCATGACCTTACCAAGGACAGCAACACCACTTCTTCCTGTCTCACAAACCTCACAAAACCCGAAACCGACCCTGTGTCATTCTCCCTCGATTTAACACTCAACTTCAACTCCAGTGATGGCGAGTTGAAGCGCGCAAGTGATGCCAGCAGTGAAGTAGGAGCTGAAGCACAACCTTCAGGATCAGCAATTCCCAGGGTCTTCTCTTGTAATTACTGTAGGAGAAAGTTCTTCAGTTCTCAGGCATTGGGAGGCCATCAAAATGCTCATAAAAGGGAGAGGACAATGGCGAAGCGAGCGATGCGAATGGGAATGTTCACCGAGCGGTATACAAGCCTGGCATCATTGCCTCTTCATGGTTCTGCTTTTCGGTCTCTCGGTGTCGAAGTTCATGCTGCCATGCACCAAAGACACATGCCATCACTGAGGGCTCCTAACTTAAGAGCTGGTGCAAAATTTGAGAAAGATTATTTTGGACCAAACATGTTCATGGAAGATGAAGATAATATGGGTCTGTTTTGGCCTGGGAGTTTCCGGCAGGTGGAAGGTAGAGCCGGTGTTAGCATGGGACATGAACACGCTCCAAATTCAACTACTAGTTTTGTAGCAGTTGCGCCGCCGCCACCGCCACTACCACCACCGCCGCAACCACAAACATCCCCATCTCCTGATCTCACTCTGAAGCTCTAA 777 0.4826 MMTPNLNLEPENISEVSSQVASTISLQETSHDLTKDSNTTSSCLTNLTKPETDPVSFSLDLTLNFNSSDGELKRASDASSEVGAEAQPSGSAIPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSAFRSLGVEVHAAMHQRHMPSLRAPNLRAGAKFEKDYFGPNMFMEDEDNMGLFWPGSFRQVEGRAGVSMGHEHAPNSTTSFVAVAPPPPPLPPPPQPQTSPSPDLTLKL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01878 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Accr10g01878 258 SUPERFAMILY beta-beta-alpha zinc fingers 95 125 IPR036236 -
Accr10g01878 258 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Accr10g01878 258 FunFam Zinc finger protein 2 73 143 - -
Accr10g01878 258 MobiDBLite consensus disorder prediction 231 250 - -
Accr10g01878 258 MobiDBLite consensus disorder prediction 217 258 - -
Accr10g01878 258 Gene3D Classic Zinc Finger 85 144 - -
Accr10g01878 258 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 173 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01878 Accr-Chr10 43345028 43345804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01878 91 258 C2H2 Transcription Factor Family AT1G66140 42.932 7.05e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr10g01878 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01878 - - gmx:100775305 338.576