Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01877 ATGGGGAAGAAGAAGAAGAGGGTTTCCTCGAAGGTCTGGTGCTACTATTGCGATCGCGAGTTCGACGACGAAAAGATTTTGGTTCAGCATCAGAAGGCTAAGCACTTCAAATGCCATGTCTGCCACAAGAAACTCTCCACTGCTGGCGGCATGTCCATTCACGTGCTCCAGGTTCATAAAGAAAGCGTCACCAAGGTGCCCAATGCAAAACCTGGTAGAGAGTCAACAGATATTGAGATATATGGAATGCAAGGGATTCCACCAGACGTATTGGCGGCTCATTATGGGGATGATGAGGATGAAGCTCCATCAAAGACAGCCAAAGTTGATATCCCATCAAGTCAGCTTGTGGGTGGAGTTGTCCCGGCACCATTAGGCATGGGATATCCTCCTCATTCAACCTTGGGTACCATGCCACCTATTTATAATCTTTCAGCACCTGTGCCTCCCGCCACTTGGCCGGTTCCACCTCGACCTCAGCCTTGGTATCCACAACCTCCATCTGTTTCCATTCCTCCTCCTGCCCCATATGTACAGCAGCCATTGTTTCCTGTTCAGAATGTGAGGCCACCTCTACCATCAACCGCCTCTCCTGCCCTTCCAACTTCTCAAGTTGCTCCTCCTGGGTTACCTCCAACATCTACTCCAGTTTCACAACCATTGTTTCCTGTTGTTGGAAATAACCATACAATGGCCCAAAGCTCCACATTTTCTACCCCATCACTTTCTAGCAGTGTCCCATCTGCATTGCCATCAAATGCCCCTGCTGATGCTTATTCAAGTGCCAACACAACTTTGACAAATAATTATCAAGTACTAGGAGTTGCAGGAGGTACACCAGGCAACTCGCATTCTTATGCTTCCGGTCCAAATACTGGTGGTCCTTCAATTGGACCACCCCCAGTAATTTCAAACAAAGCTCCTGCAACTCAACCCGCCACTAATGAGGTCTATTTAGTCTGGGATGATGAGGCGATGTCCATGGAGGAAAGAAGAATGTCCTTGCCAAAATACCAGGTGCATGATGAAACTAGCCAGATGAGTTCTATTGACGCAGCCATAGACAAGAGGATACTTGAAAGCAGGCTAGCAGGTCGAATGGCTTTTTAG 1110 0.4802 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMSIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGDDEDEAPSKTAKVDIPSSQLVGGVVPAPLGMGYPPHSTLGTMPPIYNLSAPVPPATWPVPPRPQPWYPQPPSVSIPPPAPYVQQPLFPVQNVRPPLPSTASPALPTSQVAPPGLPPTSTPVSQPLFPVVGNNHTMAQSSTFSTPSLSSSVPSALPSNAPADAYSSANTTLTNNYQVLGVAGGTPGNSHSYASGPNTGGPSIGPPPVISNKAPATQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDETSQMSSIDAAIDKRILESRLAGRMAF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01877 369 SMART c2h2final6 12 35 IPR013087 -
Accr10g01877 369 SMART c2h2final6 36 59 IPR013087 -
Accr10g01877 369 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Accr10g01877 369 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Accr10g01877 369 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Accr10g01877 369 CDD SUF4-like 13 92 - -
Accr10g01877 369 Gene3D Classic Zinc Finger 1 66 - -
Accr10g01877 369 MobiDBLite consensus disorder prediction 233 254 - -
Accr10g01877 369 MobiDBLite consensus disorder prediction 190 214 - -
Accr10g01877 369 PANTHER ZINC FINGER PROTEIN 207 1 369 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01877 1 349 C2H2 Transcription Factor Family AT1G30970 65.097 2.40e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr10g01877 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01877 - - gmx:100819009 542.347