Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01873 ATGAAGAAACTCCACTCGAGTTTCAGGGTTTCTCTCTTATATCGTTTACTTTTGATTCTTTCCATGTTCTTGTTGGCCAAGTCTCAGGACGCAGCGGTTATGGCCATTCTCAAGAACTCCATCAATGGGTCGGGTTCGCTCCAATGGTCCGACCCGGATGTCTGCAAATGGGCTCACATTCAATGCAATTCTGCGAAACGGGTCACCGCAATTCAGATTGGGAACTTGAACCTGCAAGGCTCTCTGCCAAAGGAACTCTCTCAGCTCACAGAATTACAGCGTTTCGAGTGCCAATCCAACAGTCTTTCAGGGGCATTTCCGTCATTAGCCGGTTCCCTACAATACCTTTACATTTCAGACAACGGGTTCACCTCTATGCCTTCAGACTTCTTCAAAGGCATGTCAATGTTAGAAGAGATAATAATCGACAATAACCCTTTTCCTCAATGGCGAATTCCAGACATACTCAAAGACTGCGTATCATTAAAAACATTATCGGCGCAAAATGTTTCTTTTGACGGAGGAATTCCTGATTTTTTCGGCAAAGATGGTCCATTTCCAGGTCTGACTAAATTGACTCTGTGTTTCAATCAACTCGTAGGTGGGTTACCTTCGAGCTTCTCAGGTAGTTTAATAGAGACACTATGGGTGAATGGACAAAAGAGTAATTCTAAACTTAATGGCACACTTGCGGTGTTACAGAACATGACTTCATTGAAGCAGATTTGGGCTCATGGTAATTCCTTCACTGGTCCGATCCCTGACCTTTCGCACCATGATCAATTGTTTGATGTGAGTTTGAGGGATAACCAGTTAACTGGTGTTGTTCCGTCGTCTCTTATGGCTCTTGCTAGTTTGCAAGTCGTGAATTTAACTAACAACTATCTTCAAGGACCCATGCCTGCGTTTAATTCAGGAGTACGTGCGGATATAGAGGGAATAAATCAGTTTTGCACGACCAAGCCTGGTCAGCCATGTAGTTCTTTGGTGAATGCTTTATTGTCTGTGGTTGAACCTTTGGGTTATCCATTGAAGTTTGCTCAAAGTTGGAAGGGCAATGATCCTTGTGCTGGGAACTGGTTAGGAATTGCTTGTGCAGGTGGGAATATTACTGTTGTGAATTTTCAGAACATGGGCCTTTCTGGGACTGTTTCGCCTACATTTTCCAGACTCACATCAGTAAAAAAGTTGCTTCTTGCTAACAATAATCTCACTAGTACTGTACCTCAGGAGCTTACAAGTATGCCTCATTTGGAGGAGCTGGATATTTCAAATAATCATATATATGGTGTGTTGCCAACATTTCGGAATGGTGTGATTGTTAAATCAGGTGGGAATCCTGATATTGGCAAGGACAAGCCTTCTTCTCCGCCGGGACCTGACTCAAATAATACTTCAGGTAATGGTAAGAAACAGAATTCAAGAATCATTGTTGTTGTTGTTGTGGTGGTGGGGGTTGTCGTTTTACTTGGTGTGCTAGTTTGGGGAGGCATCTGGTTTAACAGAAAAAAGAAGCATTCAAGCAAAATTCAAGTTCCTGACGGCGTAGTGATACATCCTCAGCGTTCTGGATATAGAAATCACTTGAAAATCAGTGTCGTAGGAGCTGGTTCTGATGCTAATAATGGACATATTATCAGCACCAGTAATGCAGCTGGTGATGTTCATGTGGTGGAAGCTGGTGGTATGGTGATTTCAATTCAAGTTTTAAGAGAAGCTACCAACAATTTCAGTAGAGAGAACATACTGGGGAAGGGCGGTTTTGGCACCGTGTACTTGGGGGAATTGCACGATGGGACAAAGATCGCGGTGAAGAGGATGGAATCTGGAGTGGAGGGTGAGAAGGGGCTGAGCGAATTCAAAGCTGAAATCAATGTACTCACTAGGGTTCGTCATAAGCATTTGGTTGCTCTCATGGGGTATTGCTTAGATGAAAATGAGAGGCTTCTTGTGTATGAGTACATGCCTCAGGGGACCCTAAGTAGACACTTGTTCAACTGGAAAGATGAAGGGTTAAGGCCACTGGAATGGACAAGGAGACTTATCATTGCCTTGGATGTTGCTAGAGGAGTTGAGTATCTTCATGGTTTGGCCCAACAAATTTTCATTCATAGGGATCTCAAACCATCAAACATCCTTCTTGACGATGATATGCGAGCTAAAGTGTCCGACTTCGGATTGGTTCGCCTAGCCCCAGAAGGAAAAGCCTCATTCGAAACCAGACTTGCTGGAACTTTTGGCTATTTGGCACCAGAATATGCAGTAACTGGGCGAGTAACGACGAAGGTTGATGTGTATAGTTTTGGAGTGATTCTTATGGAGATCATAAGTGGGAGGAAAGCACTTGATGACAGCCAAGCTGAAGAGAATGTCCACCTAGCCACATGGTTCCGAAGAATGATGCTGAACGAAGACACGTTCCGAAAGGCCATTGATCCAGAAATAGATGCCAATGAGGACACCCTAACCAGCATCAAGACAGTTGCAGAGCTGGCCGGCCATTGCTGCGCGAGAGACCCTTATCAAAGGCCAGACATGTGCATCGCCGTGAACGTGCTGGCGCCTCTTGTGGAGGTCTGGAAGCCTGCAGAAGCAAGTTCTTCTGATGACATTGGTGGGATTGATCTTGATATGGACCTTCCTCAAGCTCTTAAAAAATGGCAGGCTTTTGAAGGAATGAGCTATACCACCACCATGGCCACCAGGGATGCTACTTCATCCTTGATTTCCAGTGCAGATAGTACACAGTCAAGCATACCTCCAAGGCCATTTGGACTTGGAACTTCTTTCACTTCTTCAGATGGAAGATGA 2811 0.4454 MKKLHSSFRVSLLYRLLLILSMFLLAKSQDAAVMAILKNSINGSGSLQWSDPDVCKWAHIQCNSAKRVTAIQIGNLNLQGSLPKELSQLTELQRFECQSNSLSGAFPSLAGSLQYLYISDNGFTSMPSDFFKGMSMLEEIIIDNNPFPQWRIPDILKDCVSLKTLSAQNVSFDGGIPDFFGKDGPFPGLTKLTLCFNQLVGGLPSSFSGSLIETLWVNGQKSNSKLNGTLAVLQNMTSLKQIWAHGNSFTGPIPDLSHHDQLFDVSLRDNQLTGVVPSSLMALASLQVVNLTNNYLQGPMPAFNSGVRADIEGINQFCTTKPGQPCSSLVNALLSVVEPLGYPLKFAQSWKGNDPCAGNWLGIACAGGNITVVNFQNMGLSGTVSPTFSRLTSVKKLLLANNNLTSTVPQELTSMPHLEELDISNNHIYGVLPTFRNGVIVKSGGNPDIGKDKPSSPPGPDSNNTSGNGKKQNSRIIVVVVVVVGVVVLLGVLVWGGIWFNRKKKHSSKIQVPDGVVIHPQRSGYRNHLKISVVGAGSDANNGHIISTSNAAGDVHVVEAGGMVISIQVLREATNNFSRENILGKGGFGTVYLGELHDGTKIAVKRMESGVEGEKGLSEFKAEINVLTRVRHKHLVALMGYCLDENERLLVYEYMPQGTLSRHLFNWKDEGLRPLEWTRRLIIALDVARGVEYLHGLAQQIFIHRDLKPSNILLDDDMRAKVSDFGLVRLAPEGKASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEIISGRKALDDSQAEENVHLATWFRRMMLNEDTFRKAIDPEIDANEDTLTSIKTVAELAGHCCARDPYQRPDMCIAVNVLAPLVEVWKPAEASSSDDIGGIDLDMDLPQALKKWQAFEGMSYTTTMATRDATSSLISSADSTQSSIPPRPFGLGTSFTSSDGR 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01873 936 FunFam receptor protein kinase TMK1 539 654 - -
Accr10g01873 936 ProSitePatterns Protein kinases ATP-binding region signature. 583 605 IPR017441 GO:0005524
Accr10g01873 936 SUPERFAMILY L domain-like 38 436 - -
Accr10g01873 936 Gene3D Ribonuclease Inhibitor 27 323 IPR032675 -
Accr10g01873 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672|GO:0006468
Accr10g01873 936 Pfam Leucine rich repeat N-terminal domain 331 365 IPR013210 -
Accr10g01873 936 Pfam Leucine rich repeat N-terminal domain 29 63 IPR013210 -
Accr10g01873 936 FunFam Leucine-rich repeat receptor-like kinase 328 452 - -
Accr10g01873 936 FunFam Receptor-like kinase TMK4 28 323 - -
Accr10g01873 936 Gene3D Phosphorylase Kinase; domain 1 540 654 - -
Accr10g01873 936 Pfam Protein kinase domain 578 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g01873 936 SUPERFAMILY Protein kinase-like (PK-like) 558 861 IPR011009 -
Accr10g01873 936 SMART LRR_typ_2 111 133 IPR003591 -
Accr10g01873 936 SMART LRR_typ_2 186 209 IPR003591 -
Accr10g01873 936 SMART LRR_typ_2 415 437 IPR003591 -
Accr10g01873 936 SMART LRR_typ_2 391 414 IPR003591 -
Accr10g01873 936 Gene3D Ribonuclease Inhibitor 328 453 IPR032675 -
Accr10g01873 936 Pfam Leucine rich repeat 387 428 IPR001611 GO:0005515
Accr10g01873 936 PANTHER OSJNBA0070M12.3 PROTEIN 14 936 - -
Accr10g01873 936 FunFam receptor protein kinase TMK1 655 872 - -
Accr10g01873 936 MobiDBLite consensus disorder prediction 446 470 - -
Accr10g01873 936 Gene3D Transferase(Phosphotransferase) domain 1 655 871 - -
Accr10g01873 936 MobiDBLite consensus disorder prediction 906 936 - -
Accr10g01873 936 ProSiteProfiles Protein kinase domain profile. 577 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g01873 936 CDD STKc_IRAK 583 846 - -
Accr10g01873 936 SMART serkin_6 577 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01873 Accr-Chr10 43272472 43275564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01873 68 859 Receptor kinase-like Gene Family AT5G07280 30.676 6.20e-82 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Accr10g01873 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01873 K00924 - gmx:100776064 1195.26