Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01863 ATGGATGAACCGGGGGAACTTGGAGAGAGGCCTATTTTCAGAGATATTAGACGCTATTACTGTGAATACTGTGGCATCTGTCGGTCCAAAAAGACCCTGATAACCTCTCATATCAATTCTTGCCACAAGGAGGAGTTGGAAAGAATCAAAGTGGACAAAGATGATGAAGTCGGGGACACAAAATCCAATACTTGCAAGGAGTGTGGTGCTAGTTTCAAAAAACCAGCATATTTGGTGCAGCACATGCAAAGCCATTCTCTTGAGAGACCATATGTGTGTTCTATTGATGACTGTCAAGCAAGTTACCGAAGAAAGGATCACTTGACTCGCCACCTTCTGCAGCATAAAGGGAAAACTTTTAAATGTCCAATCAAGGATTGCAATCGTGACTTCGCTTTCCAAGGGAATATGACCAGGCATGTCAAAGAACTTCATAACGGGAATTCCTCCCCAGCTAAAGTGGAAACTCTGAAGCAGTATGAATGCCCAGAAATTGGCTGTGGAAAGGTTTTCAAATTTGCTTCAAGGCTACAAAAGCATGAAAATTGTCATGTTAAGCTGGACTCAGTAGAGGTAGTCTGCTTGGATCCTGGTTGTATGAAGCATTTTACTAATGTCCAGTGCCTTAAAGCCCATGTCAAAACCTGTCATCAATTTGTGACCTGTGAGACTTGTGGGAAAAAGGAACTGAAGAAAAATATCAAGCGGCACCTCCGGTCACATGAAACTAGTTCTTCATCAGAGGCATTTGAATGTGAACACAAGGGTTGTGGCAGCACATTCACTACTAAATCCAATCTTGAAAAGCATGTAAAGGCTATACACTTCAAAGAAAAGCCATTTGTATGTGGCTTTCCTGATTGTGGCATGAGATTTTCCTACAAACATGTGAGGGACATGCATCAAAAAACTGGGTTACATGTTTATACACATGGGGATTTTGAAGAATCTGATGAACAATTCAGGTCAAGGCCACGGGGAGGGTGTAAGAGAAAGTGTCCTACAGTTGAAATGTTAGTTAGGAAGAGAGTCACTCCTCCCAATGAACTGGAGCACATTTTGTTTGGAGAGGATACAGAGTAA 1083 0.4201 MDEPGELGERPIFRDIRRYYCEYCGICRSKKTLITSHINSCHKEELERIKVDKDDEVGDTKSNTCKECGASFKKPAYLVQHMQSHSLERPYVCSIDDCQASYRRKDHLTRHLLQHKGKTFKCPIKDCNRDFAFQGNMTRHVKELHNGNSSPAKVETLKQYECPEIGCGKVFKFASRLQKHENCHVKLDSVEVVCLDPGCMKHFTNVQCLKAHVKTCHQFVTCETCGKKELKKNIKRHLRSHETSSSSEAFECEHKGCGSTFTTKSNLEKHVKAIHFKEKPFVCGFPDCGMRFSYKHVRDMHQKTGLHVYTHGDFEESDEQFRSRPRGGCKRKCPTVEMLVRKRVTPPNELEHILFGEDTE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01863 360 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Accr10g01863 360 Gene3D Classic Zinc Finger 12 90 - -
Accr10g01863 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 189 IPR013087 -
Accr10g01863 360 ProSitePatterns Zinc finger C2H2 type domain signature. 283 307 IPR013087 -
Accr10g01863 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Accr10g01863 360 ProSitePatterns Zinc finger C2H2 type domain signature. 252 275 IPR013087 -
Accr10g01863 360 Pfam Zinc finger, C2H2 type 250 275 IPR013087 -
Accr10g01863 360 Pfam Zinc finger, C2H2 type 120 145 IPR013087 -
Accr10g01863 360 Pfam Zinc finger, C2H2 type 160 181 IPR013087 -
Accr10g01863 360 Pfam Zinc finger, C2H2 type 91 115 IPR013087 -
Accr10g01863 360 Pfam Zinc finger, C2H2 type 64 85 IPR013087 -
Accr10g01863 360 SUPERFAMILY beta-beta-alpha zinc fingers 101 148 IPR036236 -
Accr10g01863 360 Gene3D Classic Zinc Finger 91 116 - -
Accr10g01863 360 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Accr10g01863 360 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Accr10g01863 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 120 IPR013087 -
Accr10g01863 360 ProSitePatterns Zinc finger C2H2 type domain signature. 122 145 IPR013087 -
Accr10g01863 360 Gene3D Classic Zinc Finger 222 278 - -
Accr10g01863 360 Gene3D Classic Zinc Finger 117 156 - -
Accr10g01863 360 SUPERFAMILY beta-beta-alpha zinc fingers 62 115 IPR036236 -
Accr10g01863 360 Gene3D Classic Zinc Finger 157 220 - -
Accr10g01863 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 150 IPR013087 -
Accr10g01863 360 SUPERFAMILY beta-beta-alpha zinc fingers 233 285 IPR036236 -
Accr10g01863 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 280 IPR013087 -
Accr10g01863 360 SUPERFAMILY beta-beta-alpha zinc fingers 158 186 IPR036236 -
Accr10g01863 360 PANTHER ZINC FINGER PROTEIN 10 350 - -
Accr10g01863 360 Gene3D Classic Zinc Finger 279 304 - -
Accr10g01863 360 SMART c2h2final6 120 145 IPR013087 -
Accr10g01863 360 SMART c2h2final6 281 307 IPR013087 -
Accr10g01863 360 SMART c2h2final6 91 115 IPR013087 -
Accr10g01863 360 SMART c2h2final6 250 275 IPR013087 -
Accr10g01863 360 SMART c2h2final6 63 85 IPR013087 -
Accr10g01863 360 SMART c2h2final6 160 184 IPR013087 -
Accr10g01863 360 SMART c2h2final6 220 241 IPR013087 -
Accr10g01863 360 SMART c2h2final6 19 42 IPR013087 -
Accr10g01863 360 SMART c2h2final6 192 217 IPR013087 -
Accr10g01863 360 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01863 Accr-Chr10 43129989 43132570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01863 87 310 C2H2 Transcription Factor Family AT1G72050 50.362 7.25e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr10g01863 zf-C2H2 0.0022 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01863 K09191 - qsa:O6P43_001489 581.252