Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01848 ATGGCTGCTTTGCAGAGAGTGACACAGTCAAGCATGACTACTTGTGTAAGCAACTATGGCACCTGCAAAGGTGGTGGTGGTGCAGCTATTGAGAAGGCGGTTCCTGATCAGTTCCCAGCTGGTCTGAGAGTTCTAGTTGTGGACGATGACATCATGACTTTGAAAATCATTGAACAAATGTCTCTCAAGTGTCATTATCGCGTCACTACATGTTCTGAGGCTATTGTTGCTTTAAATCTTCTACGAGAAAAAAAAGGCTGTTTTGATGTAGTACTGAGTGACGTTTATATGCCTGACATGGATGGGTATAAGCTCCTAGAACATGTTGGGCTCGAGATGGATCTTCCTGTTATCATGATGTCTGCTGATGGAAGAACAAGTGCTGTGATGAAGGGTATTAGACATGGGGCTTGTGACTATTTGATCAAGCCTGTTCGTGAGGAGGAATTGAGGAATATATGGCAGCACGTTGTTAGGAAAATGTGGAATGAAAACAAAGAACATGAAAATTCTGGCAGTGTGGAAGATAATGATAGGAATAAACAAGGAAATGATGATACTGAATATGCTTCGTCTGTAATTGATGCGGCAGAAGTAGTTAAAGTGCCTAAAAAGAGGATCAGTTCTAAAGAAGATGATGATGGTGAACTGGAGAACGAAGATCCATCCACATCTAAGAAGCCCCGTGTGGTTTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCCGTGAACCAACTTGGGCTTGATAAGGCTGTACCAAAGAGAATTCTTGAACTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCTAGTCATCTGCAGAAATTTAGGCTTTATTTGAAGAGAATAAGTGGAGTGGCACAGCAGCAGAATGGGATTCCAAACACAGCCTCCGGGTCTACGGAATCCAGGCTAGGAGGACTTGGAAGGTTAGACATCCAAGCTCTGGCTGCCACTGGCCAAGTTCCTCCTCAAACATTAGCAGTTCTTCATGCAGAACTATTAGGTCGTCCAGCCATGGACCAGACGGCTCTTCTACAATCTTCCATACAGGGCCCCAAACATTCCCCTGCGGAACATGCTGTTGCATATTGTCAGCCTCAGCCTTTAGTAAAATGCCCTTCCAACATTGCCAAGAATTTTCCTCAATCCATCCTTACTGTGGATGACGCTCCTTCAGGCTATGGAGCATGGCCACCATCTGATACGATTGGTTCAATGGGATCCAATGGTAATCATGGAAGGGTGAGTGTTCAAAATAATAACATGCTGATGGATGTACTGCAGCACCAGCAAAGGCAGCAGTTCCAGCAAACACCACAGCATAAGCTGCAGCAGCAATCGCTCATGCACGATCAAAGTCGTTCAATCAATGTTCAACCATCTTGCTTGGTGGCTCCTTCTCAAACTTCAGGCACTTTCCAGGTTAACGGTCCTGCTTCTGTCAACCAGAATTCCAGTTTGACTAGGAATGCCCTTACGGACTATAGTCTCTTTGCATCCCAATCAAGTCATCCTTCATTAAATATTGCTCAATTTCCTGGTGAGGACACCAAAGCTAAAGGTGTTCTTTGTGGATATGTTGCTCCAGGCTCCATCTCGCATTCAGTAAGTGCTAACAATAGCAATACCCAACAGCTTCACAAGTCATCTTTGGCATTCGGCGCCGTGAGAGCTTGGCCAACTCTTTCACCAACCGTGTCTGATATACAAGTTCCGTATGGTGTTTCTAAATCAGGTGATCCAATTGATCAAGTTCATGTAAGGAATCTTGGATTTGTTGGGCAAGGTAGCAGTATTCCGAGTCGGTTTGCTGCTCATGAAATTGAATCACCTGTCAGTGACTTAAGTCAGGGAAAAATCCCTCTAGATAGCAATGGGAACTCAGTGAAGCAGGAGCCAAGTATGGATTTTATGGATAACTCAAAAGTGGGTGCCCCCATCTTACAGAGATATCCATCTGATCCCATGAATGTGTTCACTGAATAG 1995 0.4431 MAALQRVTQSSMTTCVSNYGTCKGGGGAAIEKAVPDQFPAGLRVLVVDDDIMTLKIIEQMSLKCHYRVTTCSEAIVALNLLREKKGCFDVVLSDVYMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKMWNENKEHENSGSVEDNDRNKQGNDDTEYASSVIDAAEVVKVPKKRISSKEDDDGELENEDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRISGVAQQQNGIPNTASGSTESRLGGLGRLDIQALAATGQVPPQTLAVLHAELLGRPAMDQTALLQSSIQGPKHSPAEHAVAYCQPQPLVKCPSNIAKNFPQSILTVDDAPSGYGAWPPSDTIGSMGSNGNHGRVSVQNNNMLMDVLQHQQRQQFQQTPQHKLQQQSLMHDQSRSINVQPSCLVAPSQTSGTFQVNGPASVNQNSSLTRNALTDYSLFASQSSHPSLNIAQFPGEDTKAKGVLCGYVAPGSISHSVSANNSNTQQLHKSSLAFGAVRAWPTLSPTVSDIQVPYGVSKSGDPIDQVHVRNLGFVGQGSSIPSRFAAHEIESPVSDLSQGKIPLDSNGNSVKQEPSMDFMDNSKVGAPILQRYPSDPMNVFTE 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01848 664 PANTHER TWO-COMPONENT RESPONSE REGULATOR 42 363 IPR045279 GO:0009736
Accr10g01848 664 Gene3D - 42 219 - -
Accr10g01848 664 ProSiteProfiles Response regulatory domain profile. 43 158 IPR001789 GO:0000160
Accr10g01848 664 MobiDBLite consensus disorder prediction 617 639 - -
Accr10g01848 664 FunFam Two-component response regulator 42 179 - -
Accr10g01848 664 Pfam Response regulator receiver domain 44 153 IPR001789 GO:0000160
Accr10g01848 664 CDD REC_typeB_ARR-like 44 158 - -
Accr10g01848 664 SUPERFAMILY CheY-like 41 166 IPR011006 -
Accr10g01848 664 SUPERFAMILY Homeodomain-like 224 284 IPR009057 -
Accr10g01848 664 Gene3D - 223 286 - -
Accr10g01848 664 FunFam Two-component response regulator 223 286 - -
Accr10g01848 664 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 283 IPR017930 -
Accr10g01848 664 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
Accr10g01848 664 SMART REC_2 42 154 IPR001789 GO:0000160
Accr10g01848 664 MobiDBLite consensus disorder prediction 165 190 - -
Accr10g01848 664 MobiDBLite consensus disorder prediction 165 185 - -
Accr10g01848 664 Pfam Myb-like DNA-binding domain 229 277 IPR001005 -
Accr10g01848 664 MobiDBLite consensus disorder prediction 204 226 - -
Accr10g01848 664 MobiDBLite consensus disorder prediction 620 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01848 Accr-Chr10 42959365 42963341 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01848 76 342 Response Regulator Gene Family AT3G16857 56.446 7.84e-97 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Accr10g01848 Response_reg 1.5e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01848 - K14491 pcin:129311779 1164.44