Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01840 ATGTCGTCAGGAAGTTCGCCCACGTCCGCGGCTGAGCCCAACGCGCCTCTCCTTCGTTCCCGCCAGGGATCCTCTGATGCACCCAGGACTCCTACACTCGCGCTCCTCCTCGGCCGTGCTGTCGGCCGTCGGGGACCCTCCATGCTGGTGCGGGAGACGGCAGCTCGCGAGCTAGAAGAGAGGAGGGCCGATTGGGGCTATTCGAAGCCTGTTGTCATTCTCGACATCTCGTGGAATATGGCCTTTGTGGTGGTCTCAATTGTGATGCTTCTTTTGACGACCAACGAGAAGTGTAACACGCCGATCCGGGTCTGGATCTGTGGGTATGCGCTGCAGTGCTTGGTTCATGTGGTTCTCGTGTGGCTCGAGTATAGGAGGAGGGCTAGGAGGGTTTCGCGGATGCGGAGGGCTCAGGATGGTGATATTGAAGCTCGTAATGTTGAGGATACCAACGACAGTGAAGATGATGAAGCTGGAGGTGGGAGTTCATCAAATTCGTCTCGCTCCGGATTCACCAAACGATGTGAATCAGTGAATACCATGGTTTCTTTCCTTTGGTGGATAGTTGGTTTTTATTGGGTGATCTCAGGTGGTGACACTCTTCTGCAAGATGCTCCGCATTTGTATTGGCTGGCTGTTGTTTTTCTGGCATTTGATGTCTTTTTTGCCATCTTTTGCGTTGTTTTGGCCTGCTTGATTGGCATTGCCCTCTGTTGTTGTTTGCCATGCATCATTGCTATTCTCTACGCAGTTGCTGGACAGGAAGGTGCATCAGAAGCAGATCTTAGTCTACTTCCGAAATATAAATTTCGCATGTTAAACAATGAGGAAAAGCCTACTGGTGGAGCAGGATCGATGGTTCCTACAGAAACGAGTAGTGGGTACCTGGCAAATGAAAGAATACTTCTACCTGAAGATGCGGAATGCTGCATATGTCTCACTTCATACGAGGATGGAGCAGAACTCAATGCTCTACCATGCAACCATCATTTCCATTCTCCATGCATTGTGAAATGGTTGAAAATGAATGCAACTTGTCCTCTCTGCAAGTACAATATTCTTAAGGGAAATGAACAGGTGTGA 1083 0.4968 MSSGSSPTSAAEPNAPLLRSRQGSSDAPRTPTLALLLGRAVGRRGPSMLVRETAARELEERRADWGYSKPVVILDISWNMAFVVVSIVMLLLTTNEKCNTPIRVWICGYALQCLVHVVLVWLEYRRRARRVSRMRRAQDGDIEARNVEDTNDSEDDEAGGGSSSNSSRSGFTKRCESVNTMVSFLWWIVGFYWVISGGDTLLQDAPHLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSLLPKYKFRMLNNEEKPTGGAGSMVPTETSSGYLANERILLPEDAECCICLTSYEDGAELNALPCNHHFHSPCIVKWLKMNATCPLCKYNILKGNEQV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01840 360 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Accr10g01840 360 SUPERFAMILY RING/U-box 297 354 - -
Accr10g01840 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 358 IPR013083 -
Accr10g01840 360 MobiDBLite consensus disorder prediction 157 171 - -
Accr10g01840 360 MobiDBLite consensus disorder prediction 1 29 - -
Accr10g01840 360 PANTHER TARGET OF ERK KINASE MPK-1 40 358 - -
Accr10g01840 360 MobiDBLite consensus disorder prediction 144 171 - -
Accr10g01840 360 SMART ring_2 309 349 IPR001841 -
Accr10g01840 360 FunFam E3 ubiquitin protein ligase RIE1 289 357 - -
Accr10g01840 360 CDD RING-H2_PA-TM-RING 308 350 - -
Accr10g01840 360 Pfam Ring finger domain 308 350 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01840 Accr-Chr10 42914679 42919061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01840 1 359 C3H Transcription Factor Family AT1G68070 69.081 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01840 - K13148 qsa:O6P43_025918 531.561