Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01817 ATGGGTGACATGAAGGATAAGTTAAAGGGTTTCATGAAGAAAGTCTCTCAATCACCCTCCGGTAAATTCAAGGGTCAAGGAAGAGTTCTTGGATCATCCTCTACCCCATCTTCATCATCTGCATCCGCTAGTTCTAGTCTTCTCCGTCCTACGCAGAATTCGGGTCCAAAACCAAGTTCTGCATCGGCGAGCTCTCGACCGCTACCCCAGAAAACAATCGTTTCGGAGTCGAATAGGAAGGAAGGTTCGAGTAAGTCCAATCCTGATCGCAAACCGGTGAACGGGTTTGACCCTTATGATTCATTGATAACTACTGGGAAGAGATCTAAAAATGAGTATTCTTTGAATGTGTATGAATGTCCTATTTGTGGGCGATCGTTTAGGTCCGAGGAAGATGTGTCTATACATGTGGATACCTGTCAGGGTGGCTCAGTTGAGCGTGATGACGGAGATGGTGTTTCACAATTACCTGACAGTGGAGTTCAGTTAAATGGTGAATTGGAGGCTTGCATCAGTACGTACAAGTCAGGGAAGCCATCTGAGGGTTCGGTTGAAGTTGTTCTGAAACTGCTGAGGAATATTGTGAAGGAACCAGATAACGCAAAGTATAGGAAAATTAGGTTGACTAATCCAAAGATAAAAGAGGCTCTTAGTGAGGTTGCAGGGGGAATTGAGCTTCTGAGCTTTGTAGGATTTGAGCTAAAGGAAGAGGATGGAGAGAGATGGGCAGTGATGGAAGTTCCTACTGAAGAGCAAATAAAATTGATTCAGAAAGCAATGACATTATTGGAATCACCAGTACTGCAAGAACCTGTAAAGAGAGACAATTTGGCATCTGAAAAATGTGTTGAGATGAATAAAGAGGCAGAACCAAAAAAGGTGGACAGACAGGTAAAGGTCTTCTTCGCTGTGCCAGAAAGCATTGCATCAAAGATTGAGCTACCAGATTCTTTCTATAACCTTTCAATTGACGAGGTGAAAAGGGAAGCTGAATTGAGGAGGAAAAAAATTGCAGATTCTCAGCTTTTAATCCCCAAGTCACTGAAAGAAAAGCAAACAAAAGCTTCGAGGAGGAGATACAGAAAAGCTATGATTCGGATCCAGTTTCCAGATGGAGTGATACTTCAAGGTGTATTTAATCCATGGGAACCGACAACTGCTTTGTACGAGTTTGCCAGCTCCGCATTGAAAGAACCATGTTTGGAATTTGACCTAATGCATCCCGTACTTGTTCAACGAAAGGTTATCCCTCATTTCCCAAGAGCAGGGGAGAAAGCTGTTACATTAGAGGATGAGGACCTGGTGCCTTCAGCTCTCATCAAGTTGAAACCTCATGAAACGGATCATGTTGTTTACACTGGCCTGAGAAACGAATTGCTTGAAATCAGTGAACCCCTCTCATAA 1404 0.4323 MGDMKDKLKGFMKKVSQSPSGKFKGQGRVLGSSSTPSSSSASASSSLLRPTQNSGPKPSSASASSRPLPQKTIVSESNRKEGSSKSNPDRKPVNGFDPYDSLITTGKRSKNEYSLNVYECPICGRSFRSEEDVSIHVDTCQGGSVERDDGDGVSQLPDSGVQLNGELEACISTYKSGKPSEGSVEVVLKLLRNIVKEPDNAKYRKIRLTNPKIKEALSEVAGGIELLSFVGFELKEEDGERWAVMEVPTEEQIKLIQKAMTLLESPVLQEPVKRDNLASEKCVEMNKEAEPKKVDRQVKVFFAVPESIASKIELPDSFYNLSIDEVKREAELRRKKIADSQLLIPKSLKEKQTKASRRRYRKAMIRIQFPDGVILQGVFNPWEPTTALYEFASSALKEPCLEFDLMHPVLVQRKVIPHFPRAGEKAVTLEDEDLVPSALIKLKPHETDHVVYTGLRNELLEISEPLS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01817 467 MobiDBLite consensus disorder prediction 19 81 - -
Accr10g01817 467 Gene3D - 171 265 - -
Accr10g01817 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 146 IPR013087 -
Accr10g01817 467 CDD PUB 169 265 - -
Accr10g01817 467 ProSiteProfiles UBX domain profile. 358 442 IPR001012 GO:0005515
Accr10g01817 467 SMART PGNneu 182 249 - -
Accr10g01817 467 SUPERFAMILY Ubiquitin-like 330 442 IPR029071 -
Accr10g01817 467 Pfam PUB domain 181 256 IPR018997 -
Accr10g01817 467 Gene3D - 352 445 - -
Accr10g01817 467 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 466 - -
Accr10g01817 467 SUPERFAMILY PUG domain-like 177 263 IPR036339 -
Accr10g01817 467 FunFam UBX domain-containing protein 6 352 443 - -
Accr10g01817 467 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01817 Accr-Chr10 42491037 42494669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01817 1 390 C2H2 Transcription Factor Family AT2G01650 54.177 4.24e-141 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr10g01817 PUB 5.1e-19 No_clan