Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01800 ATGGACAAGCCTGTCTTCTTGAACCGTTCCATAGCTTCCACATTGTCTCTCATCATTATTCTCTCTTTCATGGCTTTGCATGCCACTGAAGCTAATTCCTTGTCTTGCCTCCATACTCCATACCCTCATGTCTGCAACCACTACATGACCACTAATAAACTCTCAACTTCTTCTTCTTCCTCCTCCTTTCATGATTTGGCTCTTAAGGTCACTTTGGACCAAGCCATTGAAGCCCACCAGCTAGTCTCAACTATGAAACTGGACAAGCGCTTCACAGACAGGCGAGCCAAGCTGGCCTGGACTGATTGCTTAGAGCTCTATGAAGACACGGTTCACCAGCTGAACCGCACCGTTACGAGCTCCAAAAATCTCAACGATAGGCTCACCTGGTTAAGTGCCGCCATTGCGAATCACCAAACTTGCCAACATGGCTTCCTTGATTTCAACCTCCATGCGCACCTCAACTTCTTCCCAAATATGCTCACTAACTTCTCCAAACTGATTAGCAATTCCTTAGCCATTACCAGTGCCATGTCCACAACTCAAGTTGATAGTAATAAAAATAATAATGGTGGGAGAAAGTTGTTATTTGAAGGATTATTCTTCCCCGACTGGGTTTCGAGGTCGGATAGGAGGCTTCTTGCCGGAAAGATGGCGCCAGCGGCGGATGTGGTGGTGGCGAAAGATGGGAGTGGGAGCTATAAGACGATAACAGAGGGGGTGGAGGCGGCGAGTAAGATGAGTGGCGGCGGAGGGAGGAGGGTGGTGGTGCATGTAAAAGGGGGAGTGTATGAAGAGAACGTGGTGATAAAGAGGAGAATGAAGAATGTGATGATCGTTGGAGATGGGATTGGTGTTACCGTTGTTTCTGGGAGCAAGACTGCTCAAGAAACCACCACTTTTAGGTCTGCTACTTTTGCTGTTTCTGGAGACAACTTCATGGCCAGAGATATATCCTTCGAGAACACCGCCGGGCCTGGGAGTCACCAGGCAGTGGCTTTTCGCTCCGGTGCCGACCACTCTGTGTTCTACAGGTGCAGCTTCAAGGGCTACCAAGACACTCTTTACGTCTACGCACAGCGCCAATTCTACCGTGAATGTGACGTCTACGGCACTGTCGACTTCATCTTCGGCGACGCCGCCGCTATATTCCAGAACTGCAATATCTACGTGAGAAGGCCGATGAGCAACCAGCAGAACACGGTGACGGCGCAGGGGAGATCCGACCCGAACGAGAACACCGGCATTATTCTCCACGGCTGCCTCGTGACGGCGTCGTCGGAATTGAAGCCGGTGCAGGGCTCTTTCAAGACCTTTCTTGGCCGGCCATGGAAGGAGTACTCGAGGACGGTGGTGATGAAGAGCAACCTCGACGGGCTGATCCACCCGGACGGGTGGAAGCCATGGAGTGGGAGCTTCGCTCTGAACACTCTCTATTACGGGGAATATATGAACACCGGAAACGGAGCCGCCACCGAAGGGAGGGTGAAATGGCCAGGGTTTCACATGATCACGAGTCCGGTGGAGGCCGGAAAGTTCACTGTCAGGAACTTTCTTGCCGGCCAGTCGTGGATTGCTAGCGTCCGCGTACCGTTCGATGCCGGGTTGTGA 1611 0.5183 MDKPVFLNRSIASTLSLIIILSFMALHATEANSLSCLHTPYPHVCNHYMTTNKLSTSSSSSSFHDLALKVTLDQAIEAHQLVSTMKLDKRFTDRRAKLAWTDCLELYEDTVHQLNRTVTSSKNLNDRLTWLSAAIANHQTCQHGFLDFNLHAHLNFFPNMLTNFSKLISNSLAITSAMSTTQVDSNKNNNGGRKLLFEGLFFPDWVSRSDRRLLAGKMAPAADVVVAKDGSGSYKTITEGVEAASKMSGGGGRRVVVHVKGGVYEENVVIKRRMKNVMIVGDGIGVTVVSGSKTAQETTTFRSATFAVSGDNFMARDISFENTAGPGSHQAVAFRSGADHSVFYRCSFKGYQDTLYVYAQRQFYRECDVYGTVDFIFGDAAAIFQNCNIYVRRPMSNQQNTVTAQGRSDPNENTGIILHGCLVTASSELKPVQGSFKTFLGRPWKEYSRTVVMKSNLDGLIHPDGWKPWSGSFALNTLYYGEYMNTGNGAATEGRVKWPGFHMITSPVEAGKFTVRNFLAGQSWIASVRVPFDAGL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01800 536 Gene3D - 218 536 IPR012334 -
Accr10g01800 536 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 180 IPR035513 -
Accr10g01800 536 SMART PMEI_2 27 174 IPR006501 GO:0004857
Accr10g01800 536 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 178 IPR035513 -
Accr10g01800 536 ProSitePatterns Pectinesterase signature 2. 369 378 IPR033131 -
Accr10g01800 536 FunFam Pectinesterase 217 536 - -
Accr10g01800 536 NCBIfam pectinesterase inhibitor domain 15 176 IPR006501 GO:0004857
Accr10g01800 536 PANTHER PECTINESTERASE 20 526 - -
Accr10g01800 536 Pfam Plant invertase/pectin methylesterase inhibitor 35 174 IPR006501 GO:0004857
Accr10g01800 536 SUPERFAMILY Pectin lyase-like 218 535 IPR011050 -
Accr10g01800 536 CDD PMEI-like_3 34 180 - -
Accr10g01800 536 Pfam Pectinesterase 223 521 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01800 Accr-Chr10 42323069 42325368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01800 1 536 Carbohydrate Esterase AT1G23200 50.265 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01800 - - lja:Lj4g3v3099630.1 687.952