Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01756 ATGGATTTTCTGGCAGATCCGTGTCCTTTGCCCCTTTCTGTGCTGTTTTCGTTGCGGAATTGCGTTGAAAGGGTGAGACAGATTAGCAGCCTCGCGTTTTCTGCCATCGTCGGGAACATCTTCTCTGCGATCTTGACGTTCTGCTTTGCATTAGTGGGAACGTTTTTGGGAGCTATGACTGGAGCGTTGATAGGCCAAGAGACAGAGAGTGGCTTCATTAGAGGAGCTGCGGTGGGAGCCATATCAGGAGCTGTATTTTCCCTTGAAGTGTTTGAATCTTCTCTAGTTCTTTGGCAAACCGACGAATCTGGGATTGGGTGTCTCTTGTACTTGATTGACGTTATTACTAGCCTACTGAGTGGGAGACTTGTCCGTGAGAGGATAGGTCCAGCCATGCTAAGTGCTGTCCAAAGCCAGATGGGTGCTGTTGAAGCAAGCTTTGATGAGATTCAAAACCTCTTTGACACTGGAGGTTCCAAAGGTTTATCAGGAGATTTAGTTGAAAAAATTCCAATAGTAACTATCACTGGTGACGACAATGTTGATGCTTGTGGTGAAAGACTTTCCTGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGAGAGACAGTTAGAAGATTGCCTCATTGTCATCACATGTTTCACTTACCTTGTATAGACAAGTGGCTGTTCAGGCATGGTTCTTGCCCATTGTGTAGAAGAGATCTGTAG 708 0.459 MDFLADPCPLPLSVLFSLRNCVERVRQISSLAFSAIVGNIFSAILTFCFALVGTFLGAMTGALIGQETESGFIRGAAVGAISGAVFSLEVFESSLVLWQTDESGIGCLLYLIDVITSLLSGRLVRERIGPAMLSAVQSQMGAVEASFDEIQNLFDTGGSKGLSGDLVEKIPIVTITGDDNVDACGERLSCSVCLQDFQLGETVRRLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01756 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Accr10g01756 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 23 234 IPR044523 -
Accr10g01756 235 SUPERFAMILY RING/U-box 184 235 - -
Accr10g01756 235 SMART ring_2 190 231 IPR001841 -
Accr10g01756 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Accr10g01756 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 235 IPR013083 -
Accr10g01756 235 Pfam Ring finger domain 189 232 IPR001841 -
Accr10g01756 235 CDD RING-H2_NIPL1-like 189 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01756 Accr-Chr10 41714902 41717229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01756 11 235 C3H Transcription Factor Family AT5G66070 72.444 9.35e-113 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01756 - - gmx:100306109 402.519