Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01749 ATGGCTGTTACACCTATGAGCACTTCCAGCTTGGAATTGACCATTTCTGTCCCTGGTTTTGCTTCTTCTCCTCCTCTTCCTTCATCTGCAGTGAGAGAGCTAGACATAAACCAAATACCGTCAACAGAAGAGGAATGGATAACAATGGAGGAAGAAGAAGAAAGCAGCAATGGAGGAGGTCCTCCTCGTAAGAAACTCCGTCTTACTAAGGAACAGTCTCGTCTCCTTGAGGACAGCTTCAGACAAAACCACACTCTCAACCCAAAGCAGAAAGAATCATTGGCAAAGGAGTTGAACCTGCGAGCCAGGCAGGTGGAAGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACTGAGATGGAGTGCGAGTACCTGAAGAGATGGTTCGGATCGCTGACTGAACAGAACAGAAGGCTGCACAGGGAAGTGGAGGAGCTCAGGGCCATGAAGGTGGGGCCCCCCACCGTGATCTCCCCCCATAGTTGCCACCCACTTCCGGCATCAACCCTAACCATGTGTCCTCGCTGCGAGAAGGTCACCACCAACACCGACAAGGGCCCCACCCTGTCATCTTCCCTTCTATAA 594 0.5185 MAVTPMSTSSLELTISVPGFASSPPLPSSAVRELDINQIPSTEEEWITMEEEEESSNGGGPPRKKLRLTKEQSRLLEDSFRQNHTLNPKQKESLAKELNLRARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLHREVEELRAMKVGPPTVISPHSCHPLPASTLTMCPRCEKVTTNTDKGPTLSSSLL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01749 197 SUPERFAMILY Homeodomain-like 52 120 IPR009057 -
Accr10g01749 197 SMART HOX_1 61 123 IPR001356 GO:0003677
Accr10g01749 197 Pfam Homeobox associated leucine zipper 119 153 IPR003106 GO:0006355|GO:0043565
Accr10g01749 197 SMART halz 119 162 IPR003106 GO:0006355|GO:0043565
Accr10g01749 197 Coils Coil 132 152 - -
Accr10g01749 197 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Accr10g01749 197 Pfam Homeodomain 63 117 IPR001356 GO:0003677
Accr10g01749 197 FunFam Homeobox-leucine zipper protein 18 47 124 - -
Accr10g01749 197 CDD homeodomain 62 120 IPR001356 GO:0003677
Accr10g01749 197 MobiDBLite consensus disorder prediction 1 65 - -
Accr10g01749 197 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Accr10g01749 197 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 44 188 - -
Accr10g01749 197 Gene3D - 55 126 - -
Accr10g01749 197 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01749 Accr-Chr10 41629389 41632517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01749 31 187 Homeobox Transcription Factor Family AT1G70920 64.815 3.75e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr10g01749 Homeodomain 4.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01749 K09338 - gmx:100775341 306.219