Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01709 ATGGGTCTCTGCTTCGGTTCTCTCGCTTCCCATGGTCACGATTTTAGGGCCAAAAGACCTCACACTTTAGGCTCAGCAAGTTCTGAGAGTAGGAATGTTGAGTCATTTACTACAAACAGCACTGTGGCGAAGAGCCAATTCTCGATGGTTGCTAATGGAAGCGTCGATGGGTCCTATACTTCTCCAAGTCAGCATGTTATAGAAATGTCTAATTCCTTGAAGGTTTTCAGTCTTGGAGATTTGAAAGCAGCCACCAAGAACTTTAAATCGGATTCATTGCTCGGAGAGGGTGGTTTTGGTAAAGTTTACAAAGGTTGGTTGAATGAGAAGACGCTTTCGCCGGCCAAAGCCGGCTCTGGAATGATGGTTGCTATAAAAAAACTCAATCCTGAGAGTATGCAAGGCTTTCAAGAGTGGCAGTCAGAAGTGAGCTTCTTAGGCACCCTTTCTCACCCGAACCTGGTCAAGCTATTTGGTTTCTGCATGGAGGATGGTGAACTTCTCCTTGTGTATGAGTTCATGCCTAAGGGAAGCTTGGAGAGTCATCTCTTCAGAAGGGTTTCTAACAGAGAACCATTTTCATGGAACACACGACTCAAAATAGCTATTGATGCAGCTCAAGGCCTGGCTTTCTTGCACACTTCAGAAAAGCAAATCATATACAGAGATTTCAAGGCCTCAAATATATTACTTGATGGGAGTTACAATGCAAAAATTTCTGATTTTGGCTTGGCCAAATTAGGGCCTACTGGAGAACAATCACATGTGACTACCAGGATCATGGGCACATACGGTTATGCTGCCCCAGAATACGTAGCCACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGGTTTGGTGTAGTGCTGCTTGAAATGCTGACAGGTTTGAAAGCACTTGATTCAAAGAGGCCATCTGGGCAGCAAAATCTGGCCGAGTGGGGTAAGCCATATCTCACCAGCAAAAAGAAGTTGAAAAAAATAATGGACACCGGAATAGATGGTCAATATTCACTCAGTGCAGCATTTCAGGCAGGTCAGCTTATTCTCAAGTGCCTAGAACCTGACCCCAAGAATCGCCCTAGTATGAAGGAGGTAGTGGATGCATTGCAAGATATTGAAGCTACCCAAAACAAGTCAAAAGGTTCCATGAAAAGTTACCAATCTTCACCTCTTCAGGAAAATAAGAAGCCGATTCATCACCGATCAGTTCACGATGGCCATCGAAGCTTCAATCTATGA 1242 0.4428 MGLCFGSLASHGHDFRAKRPHTLGSASSESRNVESFTTNSTVAKSQFSMVANGSVDGSYTSPSQHVIEMSNSLKVFSLGDLKAATKNFKSDSLLGEGGFGKVYKGWLNEKTLSPAKAGSGMMVAIKKLNPESMQGFQEWQSEVSFLGTLSHPNLVKLFGFCMEDGELLLVYEFMPKGSLESHLFRRVSNREPFSWNTRLKIAIDAAQGLAFLHTSEKQIIYRDFKASNILLDGSYNAKISDFGLAKLGPTGEQSHVTTRIMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTGLKALDSKRPSGQQNLAEWGKPYLTSKKKLKKIMDTGIDGQYSLSAAFQAGQLILKCLEPDPKNRPSMKEVVDALQDIEATQNKSKGSMKSYQSSPLQENKKPIHHRSVHDGHRSFNL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01709 413 CDD STKc_IRAK 94 373 - -
Accr10g01709 413 FunFam Serine/threonine-protein kinase PBS1 174 389 - -
Accr10g01709 413 FunFam Serine/threonine-protein kinase BIK1 55 173 - -
Accr10g01709 413 Gene3D Transferase(Phosphotransferase) domain 1 174 397 - -
Accr10g01709 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Accr10g01709 413 SUPERFAMILY Protein kinase-like (PK-like) 60 369 IPR011009 -
Accr10g01709 413 PANTHER OS01G0588500 PROTEIN-RELATED 45 374 - -
Accr10g01709 413 Pfam Protein tyrosine and serine/threonine kinase 91 370 IPR001245 GO:0004672|GO:0006468
Accr10g01709 413 MobiDBLite consensus disorder prediction 395 413 - -
Accr10g01709 413 ProSitePatterns Protein kinases ATP-binding region signature. 94 127 IPR017441 GO:0005524
Accr10g01709 413 MobiDBLite consensus disorder prediction 374 413 - -
Accr10g01709 413 MobiDBLite consensus disorder prediction 374 394 - -
Accr10g01709 413 Gene3D Phosphorylase Kinase; domain 1 49 173 - -
Accr10g01709 413 ProSiteProfiles Protein kinase domain profile. 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01709 Accr-Chr10 41149601 41153998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01709 68 370 Glycoside Hydrolase AT3G07070 47.712 2.26e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Accr10g01709 PK_Tyr_Ser-Thr 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01709 - - qsa:O6P43_033520 555.058