Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01704 ATGGCCAAAAAGGCCGACTCCACAGTCAACGATAACCGGTTGAAGCGCAAGGGCGCTGGAGTTGGAAGGAAGCGACGAAGGGCTGCAAAGGATCCAAACAAGCCAAAGAGGCCTCCGAGCGCTTTCTTTGTGTTTATGTCTGAGTTCAGAGAGCAGTATAAGAAGGAACATCCAGACAATAAATCAGTCACTGCTGTTGGTAAAGCCGGCGGTAATGAATGGAGGAGCATGTCTGATGCTGATAAAGCTCCGTACGTGGCCCAGGCACAGAAGAAGAAGGCGGAATATGAAAAAACTATTAAAGCGTACAATATGAGATTGGCTGCGGGCTTAAATTCAGAGGAAGGTGAAGGTGAGTCTGATAAATCAAAGTCAGAAGTCAATGACGATGAAAATGATGATAAGGAAGAGGAGGAAGAGGAGGCGGAGTAG 432 0.4722 MAKKADSTVNDNRLKRKGAGVGRKRRRAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPDNKSVTAVGKAGGNEWRSMSDADKAPYVAQAQKKKAEYEKTIKAYNMRLAAGLNSEEGEGESDKSKSEVNDDENDDKEEEEEEAE 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01704 143 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 7 139 IPR031061 -
Accr10g01704 143 MobiDBLite consensus disorder prediction 1 17 - -
Accr10g01704 143 Coils Coil 125 143 - -
Accr10g01704 143 MobiDBLite consensus disorder prediction 18 32 - -
Accr10g01704 143 MobiDBLite consensus disorder prediction 1 41 - -
Accr10g01704 143 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 35 104 IPR009071 -
Accr10g01704 143 Gene3D High mobility group box domain 20 107 IPR036910 -
Accr10g01704 143 SMART hmgende2 34 105 IPR009071 -
Accr10g01704 143 CDD HMG-box_AtHMGB1-like 36 96 - -
Accr10g01704 143 MobiDBLite consensus disorder prediction 110 143 - -
Accr10g01704 143 Coils Coil 86 106 - -
Accr10g01704 143 MobiDBLite consensus disorder prediction 53 87 - -
Accr10g01704 143 MobiDBLite consensus disorder prediction 115 129 - -
Accr10g01704 143 Pfam HMG (high mobility group) box 35 104 IPR009071 -
Accr10g01704 143 SUPERFAMILY HMG-box 21 106 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01704 Accr-Chr10 41103580 41105241 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Accr10g01704 HMG_box 7.2e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01704 K25507 - gmx:100499992 152.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr10g01704 10 41103580 41105241 Accr10g01704 10 41103580 41105241 ECH