Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01689 ATGGTAGCTGGCGCGCAGCAGCAGCAACAACATCAGCCACAACCTCAACCTCAACCTCAACCTCAATCGCAGCAACAGACTCAGCAACCTACAACCTCTGCGGAAGATGAGGCCTTAAAGAGGAACACGGATTGCGTCTACTTTCTTGCTTCCCCCTTGACATGCAAAAAGGGAAGTGAATGTGAGTATCGCCATAGTGAGTATGCTCGGGTCAATCCCCGAGATTGTTGGTATTGGTTGAATGGCAATTGCTTGAATCCCAAATGTGCCTTCCGTCATCCGCCTCTTGATGGCTTCTTATCGCCACAGGCAGCCACTGCTGGTGGATCATCTGCACCCCCATCACAGACTGCGCCTACTTCTGCACCACATGCACCTTATAATGCTACAAAGCAAGCTGTCCCTTGCATTTTCTTCCAGAAAGGGCTTTGCTTAAAAGGTGACCGATGTGCTTTTTTGCACGGACCAAATCCTAACACCAGTAATAAAGTGCCTCAGGTTCAGGGGACTAACCAAGTCACTGAGCCTCCAAGTTTTAAGAAGGTTTTTAGTGGCCCAGAAAAGTCAACACAAGAAAGGAAAATTTCCCAAGCAAACGTTGCAAAGCCAGCTGCAGGAACTGAAGCTAAGCCTGCCCAAAAGGCTGAAACTGCTTTGCATAGAAATATAGCTGCCATAGAGAGGCATGCACCACAACCAATGGGATTTGATAATGAGGCGTCTAGATTCAAGGTAGTAAATACTCCACCTGTCACCAATGGTACCACTGTTGCCAGGCCAAACCGGGCGTATCAATCTCATGCATCAGATGATCATAGTTTCCACAATGGCAAGGAAAGTGATGAATTCTTGAGAGAATCCTCACCTGGCTTTGATGTACTTGTAGAAGATGAACTGAGGAATTCAGATTACTATGATAGAGAGGACCAATATGGAAAAGCAAGAGGTCAAGACGGCATGAACTTGGACTCTGTGAATGAATATGATTTAGGACATTCTGTAGATTATAAATCTGTAGCTGATATTGACCAAGAAAGATATTGTGGGCCACAAGGTTATGACTCGTATGACCACGTGCAAGAGACATATGAATGGGATCATCGTAGGAGTTCATCTGAAAGAATGTTCCGGGCAACAACGCATTTAGATAGGATGACTCATCGCAGATCTGGCAGTCCTGAAAATGTTGGGGTTTCAGATCTTCGACATCGTTTATCTAAGCACAGGAGGGTCAATGGTTTGAAATCTGTTGTGAGTCATGATTATGCACGTCAGAGCCATGACGATGAGCAAAGTCACCTATTCTCTTCTCAAAAGGATGCTCACCAGTTACCCCTGAATGAAAGCGCACTCAGTAGTCGCTTCCGAGGCAGGATAAAGCTTCCGGCAAATGGTGGTGAAGAATACGTGGAGAGGGAATCAGACAGGGGAAGAAATAGAAGGGCATTGTCACCTAGAACTATGCAGGCCCCTCACCCAGGTAGGTTCCGAGATAGATTGAGAGGAAGGGTGCAAGAAGATTTTGAGAGGAAAAACTTCAGGGATCGACCTATGAGGAGAGAAATAAATGGGGACCAAGATGCTGATTTTGATGGACCAAAAAGTCTTACTGAACTGCGAAATGGAAACAATAGTAAGAATAAGGAGCATCAGGTACTTGGGAAGAGGAAAAGTTTAAAGGAACAGCAACAATCTGAAGATGATTTCATGTTTGAAGGTCCAAAACCTCTTAGTGAGATTTTGAAGGAGAAGAAGGCGGCGACTGGCAAATCGTCTGAGAATAAAGAAGACAACAAAGACAGAGAAGTTACAAATGGCTGGGAAGACACCTCTGTTACAGATGCACAGAATGGCACTTTGCCTGCAAATAAGGAAGATGTGAAGAACCAGGAATCCAGGTTTCAGGCAATAGCGAACACGGTTGAAAATGATACAGCCAAGACAGATGTTACTCATGATCAATCATTTGAAGAAGGAATGATTGACAACGAAGTAGTAGAAGACCAGGAGTATGAAGGTGATGATCAGAAGGATGGTGATTATTACTATGAGCAAGTTGAGGAGGGAGACTACAATTTTGATGAAGGTGAAAATCCAGAGCAGGAAGGATACATGGATGATGAGGAGGATGGGGATGATTTTGCTAAGAAGATTGGTGTGATGCTCACATGA 2172 0.4466 MVAGAQQQQQHQPQPQPQPQPQSQQQTQQPTTSAEDEALKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWYWLNGNCLNPKCAFRHPPLDGFLSPQAATAGGSSAPPSQTAPTSAPHAPYNATKQAVPCIFFQKGLCLKGDRCAFLHGPNPNTSNKVPQVQGTNQVTEPPSFKKVFSGPEKSTQERKISQANVAKPAAGTEAKPAQKAETALHRNIAAIERHAPQPMGFDNEASRFKVVNTPPVTNGTTVARPNRAYQSHASDDHSFHNGKESDEFLRESSPGFDVLVEDELRNSDYYDREDQYGKARGQDGMNLDSVNEYDLGHSVDYKSVADIDQERYCGPQGYDSYDHVQETYEWDHRRSSSERMFRATTHLDRMTHRRSGSPENVGVSDLRHRLSKHRRVNGLKSVVSHDYARQSHDDEQSHLFSSQKDAHQLPLNESALSSRFRGRIKLPANGGEEYVERESDRGRNRRALSPRTMQAPHPGRFRDRLRGRVQEDFERKNFRDRPMRREINGDQDADFDGPKSLTELRNGNNSKNKEHQVLGKRKSLKEQQQSEDDFMFEGPKPLSEILKEKKAATGKSSENKEDNKDREVTNGWEDTSVTDAQNGTLPANKEDVKNQESRFQAIANTVENDTAKTDVTHDQSFEEGMIDNEVVEDQEYEGDDQKDGDYYYEQVEEGDYNFDEGENPEQEGYMDDEEDGDDFAKKIGVMLT 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01689 723 Gene3D - 127 196 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 102 126 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 466 629 - -
Accr10g01689 723 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 35 721 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 161 178 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 21 36 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 689 709 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 643 677 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 161 217 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 492 534 - -
Accr10g01689 723 Gene3D - 27 96 - -
Accr10g01689 723 Pfam Zinc-finger containing family 40 95 IPR041686 -
Accr10g01689 723 ProSiteProfiles Zinc finger C3H1-type profile. 39 68 IPR000571 GO:0046872
Accr10g01689 723 MobiDBLite consensus disorder prediction 466 482 - -
Accr10g01689 723 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 156 IPR000571 GO:0046872
Accr10g01689 723 MobiDBLite consensus disorder prediction 422 436 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 689 723 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 577 607 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 608 625 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 265 289 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 1 36 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 660 675 - -
Accr10g01689 723 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Accr10g01689 723 ProSiteProfiles Zinc finger C3H1-type profile. 70 96 IPR000571 GO:0046872
Accr10g01689 723 MobiDBLite consensus disorder prediction 422 449 - -
Accr10g01689 723 MobiDBLite consensus disorder prediction 104 126 - -
Accr10g01689 723 SUPERFAMILY CCCH zinc finger 131 155 IPR036855 GO:0046872
Accr10g01689 723 MobiDBLite consensus disorder prediction 543 568 - -
Accr10g01689 723 FunFam Zinc finger CCCH domain-containing protein 17 33 96 - -
Accr10g01689 723 SMART c3hfinal6 40 67 IPR000571 GO:0046872
Accr10g01689 723 SMART c3hfinal6 130 156 IPR000571 GO:0046872
Accr10g01689 723 SMART c3hfinal6 72 95 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01689 Accr-Chr10 40885879 40889307 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr10g01689 zf-CCCH_3 2.9e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01689 - - gmx:102669253 804.283