Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01686 ATGAAGCGCGATTTCTACGAAATCTCCGACGACGAATGGGACAACCATTCCTTTGAGCCCTCTCGGGTTTTTAAGAAATCACAGACTTCTGCTCCTCCCCCGATCGAGTCCTTTGCTTTTCGGCCTGGTAAGCTTGAAAATTCTGACCAGAGTAGCGATGATTGCGTCCAAGTGGAAGAAAATTTGGAGGATGAGGATGTGGAGCCGGAGGGAGGTAAGTCTGGGGCAGTGGCAAATCGTGGCCGTCGGTTTGTTGTCGACGACGACGAGGAGGAGAGCGATAGGGATGTTGCGGAAGTGTATGAAATAAAGTCAACTGACGAGGATGAAGTAGAAGAGGAGCAAGCGGATGAAATAGAAGAGGAGGAAGCGGATGAAAATGATGTGGTTGGGAGGGCTTTGTACAAGTGTGCAAAAATATCTGCAGAATTGAAAGGAGAGCTATATGGGTCGTCGGGGACTGCTTGCGATCGGTATTCTGAGGCAGAATCTTCTTCAGTGAGAATTGTGAATCAGGATGATATTGATGTGGCATGCGGGTCTGAGGATTCTGATTTTCAGCCTATCCTCAAGCCATATCAGCTTGTTGGTGTCAACTTTTTGCTCTTGTTGTATCGGAAGGGCATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGGAAAACAGTTCAGGCCATAACATATCTAACCTTATTGAAACACCGGCACAATGATCCTGGTCCACATCTTATTGTATGCCCGGCTTCTGTTTTGGAAAATTGGGAAAGGGAGCTGCAAAGGTGGTGTCCATCCTTTTCTGTTCTACAATACCATGGCTCTGGACGAGCAACATACTTCAAGGAGTTAAGCTATTTGTCTAAGGCGGGATTACCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGCAAAATTCTGAAGCGTTGGAAGTGGAGCTGTGTTTTGATGGATGAGGCACATGCTTTGAAGGATAAAAATAGCTATAGGTGGAAGAATCTAATGTCTGTTGCACGCAATGCAAACCAGCGTTTGATGCTGACAGGGACACCCCTTCAAAATGATCTACATGAATTATGGTCACTGTTGGAGTTTATGATGCCGGATATTTTTGCTACTGAAGATGTTGACTTGAAAAAATTACTGAACACAGAAGACAGAGATTTAGTTGGTCGGATGAAGTCTATCTTGGGGCCATTTATTTTACGGCGGCTAAAATCTGATGTGATGCAGCAACTTGTTCCTAAAATTCAACGAGTTGAATACGTTGTAATGGAAGTGCAGCAGGAAAATGCTTATAAGGAAGCCATTGAGGAGTATCGTGCTATTTCACAAACTCGAATGGCAAAATGTTCGGGACCTAATTCTAATAATATTCTTCAAGTTCTTCCTCGTCGACAAATCAACAATTATTTTGTTCAGTTTCGCAAGATTGCAAACCATCCCCTGTTGATTCGGCGAATCTATAGTGATGAGGATGTCATTCGCTTTGCTAGGAAGTTACATCCAGTGGGTGCTTTTGGCTTTGAATGTACTTTGGATAGGGTAATTGAGGAACTAAAAAGTTACAATGACTTCTCTATTCACCGGCTTTTACTTCATTATGCTGTCAATGATAGAAAGGGTGTCCTTCCAGATAGAAGTGTTATGTCTTCTGCAAAATGTCGGGCCTTAAAAAAGCTTCTTCCTTCACTTCAGAAACGTGGTCATCGTGTTTTAATATTTAGTCAGTGGACGTCAATGCTTGATATTTTGGAGTGGACACTTGATGTCATTGGTTTGACCTATAGACGGCTTGATGGAAGTACACAGGTAACTGAGAGGCAAACAATAGTTGATACGTTCAATAACGATACTTCTATATTTGCTTGCTTGCTTTCTACAAGAGCCGGAGGACAAGGCTTGAACTTGACAGGAGCTGATACTGTTGTAATTCATGACATGGATTTCAATCCACAGATTGATAGACAGGCAGAAGATCGTTGTCATAGGATAGGTCAAACAAGGCCTGTAACTATACATCGGCTGGTTACCAAGGGTACAGTTGACGAAAATGTATATGAGATTGCAAAAAGAAAGCTTGTACTGGATGCTGCGGTCCTTGAATCTGGCATGGAGATGGATGATAAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTATCTTCAATTTTGCTGGGTTAA 2223 0.4291 MKRDFYEISDDEWDNHSFEPSRVFKKSQTSAPPPIESFAFRPGKLENSDQSSDDCVQVEENLEDEDVEPEGGKSGAVANRGRRFVVDDDEEESDRDVAEVYEIKSTDEDEVEEEQADEIEEEEADENDVVGRALYKCAKISAELKGELYGSSGTACDRYSEAESSSVRIVNQDDIDVACGSEDSDFQPILKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHRHNDPGPHLIVCPASVLENWERELQRWCPSFSVLQYHGSGRATYFKELSYLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKKLLNTEDRDLVGRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVVMEVQQENAYKEAIEEYRAISQTRMAKCSGPNSNNILQVLPRRQINNYFVQFRKIANHPLLIRRIYSDEDVIRFARKLHPVGAFGFECTLDRVIEELKSYNDFSIHRLLLHYAVNDRKGVLPDRSVMSSAKCRALKKLLPSLQKRGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVTERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIHRLVTKGTVDENVYEIAKRKLVLDAAVLESGMEMDDKGDMPEKTMGEILSSILLG 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01686 740 Gene3D - 171 440 IPR038718 -
Accr10g01686 740 CDD SF2_C_SNF 556 689 - -
Accr10g01686 740 SMART helicmild6 595 678 IPR001650 -
Accr10g01686 740 Pfam Helicase conserved C-terminal domain 566 678 IPR001650 -
Accr10g01686 740 CDD DEXHc_Snf 190 383 - -
Accr10g01686 740 FunFam Protein CHROMATIN REMODELING 19 isoform A 161 439 - -
Accr10g01686 740 PANTHER SNF2/RAD54 HELICASE FAMILY 63 718 - -
Accr10g01686 740 MobiDBLite consensus disorder prediction 106 125 - -
Accr10g01686 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 416 IPR027417 -
Accr10g01686 740 MobiDBLite consensus disorder prediction 1 21 - -
Accr10g01686 740 Gene3D - 546 735 IPR027417 -
Accr10g01686 740 MobiDBLite consensus disorder prediction 1 95 - -
Accr10g01686 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 719 IPR027417 -
Accr10g01686 740 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 569 731 IPR001650 -
Accr10g01686 740 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 381 IPR014001 -
Accr10g01686 740 Pfam SNF2-related domain 210 496 IPR000330 GO:0005524|GO:0140658
Accr10g01686 740 SMART ultradead3 186 391 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01686 Accr-Chr10 40844037 40850646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01686 211 705 RAD5 or RAD16-like Gene Family AT5G22750 26.547 6.81e-46 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr10g01686 SNF2_N 2.8e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01686 K14439 - qsa:O6P43_026001 1228