Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01665 ATGACTCGTATTCTCAAATCCACGGACAACTCCTCCTCCGCCGCCGCCACCATCACCGGTTTGGCGCCACCTCCGGAGGCTGTCGCTTTGGAATCAGACTTCGTTGTGATCCTAGCGTCTCTGCTTTGCGCTCTCATATGCACCGTCGCCCTAATAGCCGTCTGTCGCTGCACCTGGTTCCGTCGCGTTGGATCCGGAGCTGGCGCCGGAGCTCCGCGGCAGTCTCTGGCGAATAAAGGCCTGAAGAAGAAGGTGCTTCAGTCCATCCCGAAATTCCCTTACATTGAGAGCAATCCTGATAAGTGGTTGGCCACGTCTGAGTGCGCGATTTGCTTGGCCGATTTTGCCGAAGCCGACGAGATCCGAGTTCTCCCGCAGTGTGGCCACGGCTTCCACGCGCCCTGCATAGACACCTGGCTCGGATCCCACTCCTCGTGCCCTTCGTGTCGTCAGATTCTTGCTATGCCTCCTAGGTGCCGCCGGTGCGGCCTTTACCCGGCTATTCGCGGCGTAGAATCCACCGGAACTAGAGGGGCTGAACCGGAGCTCAAGTCCAGACACAACGATAATGCCAGTACTGCTAATAATGATCATGTGAATAGCTCTACAAGCCACCACCAACGGCCCAGGGATGATAATGAATTCCTTCCATAA 654 0.5673 MTRILKSTDNSSSAAATITGLAPPPEAVALESDFVVILASLLCALICTVALIAVCRCTWFRRVGSGAGAGAPRQSLANKGLKKKVLQSIPKFPYIESNPDKWLATSECAICLADFAEADEIRVLPQCGHGFHAPCIDTWLGSHSSCPSCRQILAMPPRCRRCGLYPAIRGVESTGTRGAEPELKSRHNDNASTANNDHVNSSTSHHQRPRDDNEFLP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01665 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 155 IPR013083 -
Accr10g01665 217 MobiDBLite consensus disorder prediction 173 217 - -
Accr10g01665 217 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 27 163 - -
Accr10g01665 217 MobiDBLite consensus disorder prediction 188 202 - -
Accr10g01665 217 Pfam Ring finger domain 107 150 IPR001841 -
Accr10g01665 217 SMART ring_2 108 149 IPR001841 -
Accr10g01665 217 CDD RING-H2_EL5-like 107 150 - -
Accr10g01665 217 MobiDBLite consensus disorder prediction 203 217 - -
Accr10g01665 217 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Accr10g01665 217 SUPERFAMILY RING/U-box 90 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01665 Accr-Chr10 40645034 40645687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01665 29 162 C3H Transcription Factor Family AT1G20823 61.268 3.23e-53 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01665 - - gmx:100787383 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00021 9 300301 300867 Accr10g01665 10 40645034 40645687 CCT