LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr10g01621	ATGAATAGCATCAACGACGACAATTCCAGACAAGACCTCGACCCTCAAAGTGACCACAGTTCCGACTATTTAGCTCACTCTCTTCCTCTCCAGCCCCAGCCTCAGACCCATCCGCAGCCTCGCCGCCCTCGTGGCTTTGCGGCCACCGCGGCGGCGGCAGCTACCATCACCCCCAATTCCGCTGGAAAGGGCAAGAAAGAGAGAGAAAAAGAGAAGGAGCGCACCAAGCTCAGAGAGCGTCACCGTCGAGCAATCACTAGCCGTATGCTCGCCGGCCTCCGTCAGTATGGTAATTTCCCTCTCCCGGCTCGTGCGGACATGAATGATGTGCTTGCTGCGCTCGCCCGCGAGGCTGGTTGGGTTGTTGAGGCAGATGGCACCACCTACCGTCAGTGCCCACCTCCTTCGCAAATGGCATCATTTGCTGCAAGGTCAGTTGAAACTCCACTCTCTGCAGGTTCTTTAAGAGCTTGCACTGCTAAAGAAACACTGGAGAATCAACCACCAGTACTTAGAATTGATGAAAGCTTGTCACCTGCGTCCATTGATTCTGTTGTAATTGCAGAGAGGGATTCAAAGAATGAGAAATATCCAAGTGCAAACCCTATCAATCCAGTCGACTGCCTGGAGGCTGATCAGCTTATGCAGGATATTCATTCTGGGGTGCATGAGAATAACTTCACGGGCACACCTTATGTTCCTGTTTATATAAAACTTCCAGCTGGTATTATTAATAAATTTTGCCAGTTGATTGATCGTGAAGGAATTAGACAGGAGCTAATTCACATGAAGTCTTTAAATTTTGATGGCGTCATTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCACAGAAATATGTATGGTCTGGCTATAGGGAACTTTTTGACATTGTTAGAGAAATGAAGTTGAAGTTACAGGTTGTTATGGCTTTTCATGAATATGGAGGGGATGATTCTAGTGATCCGTTGATTTCTCTCCCACAATGGATTTTGGAGATTGGAAAAGACAACCAGGATATCTTTTTCACAGATCGTGAAGGACGGAGGAATACTGAATGTCTTTCTTGGGGCATTGACAAAGAGAGAGTTCTGAAAGGAAGAACTGGAATTGAGGTCTATTTTGATTTCATGAGAAGCTTTCGGACAGAATTTAGTGACTTGTTTGAGGAAGGCCTCATTTCTGCTGTAGAAATTGGACTTGGGGCATCTGGGGAGCTGAAATATCCTTCTTTTTCAGAAAGGATGGGATGGAGGTACCCAGGTATTGGTGAGTTTCAGTGTTATGATAAATATCTGCTACAAAGCCTGCGCAGAGCAGCCAAATTACGTGGCCACTCTTTTTGGGCTAGAGGACCTGATAATGCTGGACAATACAATTCTATGCCTCATGAAACTGGTTTCTTTTGTGAACGGGGCGATTATGACAATTATTATGGTCGCTTCTTCTTGCATTGGTATGCCCAGTCATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAAGCCTGGCTTTTGAGGAAACAAGACTAATTGTCAAGATTCCTGCTGTATACTGGTGGTACAAGACTGCTAGTCACGCAGCAGAGCTGACAGCAGGATATCACAACCCTACGAACCAGGATGGATACTCTCCTGTTTTTGAGGTTCTGAAAAATCATGGTGTGACTATGAAGTTTGTCTGCTTAGGATTTCAGCTTTCTAGTCAGGAAGCTGACGAGACGTTGGCTGACCCAGAGTGCTTGACTTGGCAGGTTGGTGTCATTTTCTTCTGCCAGGTATTGAACTCATCCTGGGATCGAGGGTTGATAGTAGCTGGAGAGAATGCAATACCATGTTATGAGAGAGAAGGGTTCAAGAGACTAGTTGATATAGCGAAGCCAAGAAATGATCCTGATCGCCACCACTTCTCATTTTTTGCATATCAACAACCTTCCATGGTTCAGGGGAATATTTGCTTACCAGAGTTGGATCACTTCATCAAATGCATGCACGGTGACATTACGGGGGATCTGTAA	2022	0.4585	MNSINDDNSRQDLDPQSDHSSDYLAHSLPLQPQPQTHPQPRRPRGFAATAAAAATITPNSAGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEADGTTYRQCPPPSQMASFAARSVETPLSAGSLRACTAKETLENQPPVLRIDESLSPASIDSVVIAERDSKNEKYPSANPINPVDCLEADQLMQDIHSGVHENNFTGTPYVPVYIKLPAGIINKFCQLIDREGIRQELIHMKSLNFDGVIVDCWWGIVEGWSPQKYVWSGYRELFDIVREMKLKLQVVMAFHEYGGDDSSDPLISLPQWILEIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDFMRSFRTEFSDLFEEGLISAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLLQSLRRAAKLRGHSFWARGPDNAGQYNSMPHETGFFCERGDYDNYYGRFFLHWYAQSLIDHADNVLSLASLAFEETRLIVKIPAVYWWYKTASHAAELTAGYHNPTNQDGYSPVFEVLKNHGVTMKFVCLGFQLSSQEADETLADPECLTWQVGVIFFCQVLNSSWDRGLIVAGENAIPCYEREGFKRLVDIAKPRNDPDRHHFSFFAYQQPSMVQGNICLPELDHFIKCMHGDITGDL	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr10g01621	673	MobiDBLite	consensus disorder prediction	1	79	-	-
	Accr10g01621	673	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	403	425	IPR001554	GO:0000272\|GO:0016161
	Accr10g01621	673	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	288	306	IPR001554	GO:0000272\|GO:0016161
	Accr10g01621	673	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	545	568	IPR001554	GO:0000272\|GO:0016161
	Accr10g01621	673	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	476	495	IPR001554	GO:0000272\|GO:0016161
	Accr10g01621	673	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	510	526	IPR001554	GO:0000272\|GO:0016161
	Accr10g01621	673	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	267	281	IPR001554	GO:0000272\|GO:0016161
	Accr10g01621	673	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	310	331	IPR001554	GO:0000272\|GO:0016161
	Accr10g01621	673	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	527	538	IPR001554	GO:0000272\|GO:0016161
	Accr10g01621	673	Pfam	BES1/BZR1 plant transcription factor, N-terminal	62	207	IPR008540	-
	Accr10g01621	673	MobiDBLite	consensus disorder prediction	62	79	-	-
	Accr10g01621	673	Pfam	Glycosyl hydrolase family 14	249	644	IPR001554	GO:0000272\|GO:0016161
	Accr10g01621	673	Gene3D	Glycosidases	223	671	-	-
	Accr10g01621	673	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	169	667	IPR001554	GO:0000272\|GO:0016161
	Accr10g01621	673	SUPERFAMILY	(Trans)glycosidases	227	669	IPR017853	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr10g01621	Accr-Chr10	40054149	40060298	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr10g01621	35	669	Glycoside Hydrolase	AT5G45300	66.667	0.0	875

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BES1	Accr10g01621		Glyco_hydro_14	4.5e-80	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr10g01621	K01177		-	gmx:100777004	1144.41