Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01620 ATGAATAGCATCAACGACGACAATTCCAGACAAGACCTCGACCCTCAAAGTGACCACAGTTCCGACTATTTAGCTCACTCTCTTCCTCTCCAGCCCCAGCCTCAGACCCATCCGCAGCCTCGCCGCCCTCGTGGCTTTGCGGCCACCGCGGCGGCGGCAGCTACCATCACCCCCAATTCCGCTGGAAAGGGCAAGAAAGAGAGAGAAAAAGAGAAGGAGCGCACCAAGCTCAGAGAGCGTCACCGTCGAGCAATCACTAGCCGTATGCTCGCCGGCCTCCGTCAGTATGGTAATTTCCCTCTCCCGGCTCGTGCGGACATGAATGATGTGCTTGCTGCGCTCGCCCGCGAGGCTGGTTGGGTTGTTGAGGCAGATGGCACCACCTACCGTCAGTGCCCACCTCCTTCGCAAATGGCATCATTTGCTGCAAGGTCAGTTGAAACTCCACTCTCTGCAGGTTCTTTAAGAGCTTGCACTGCTAAAGAAACACTGGAGAATCAACCACCAGTACTTAGAATTGATGAAAGCTTGTCACCTGCGTCCATTGATTCTGTTGTAATTGCAGAGAGGGATTCAAAGAATGAGAAATATCCAAGTGCAAACCCTATCAATCCAGTCGACTGCCTGGAGGCTGATCAGCTTATGCAGGATATTCATTCTGGGGTGCATGAGAATAACTTCACGGGCACACCTTATGTTCCTGTTTATATAAAACTTCCAGCTGGTATTATTAATAAATTTTGCCAGTTGATTGATCGTGAAGGAATTAGACAGGAGCTAATTCACATGAAGTCTTTAAATTTTGATGGCGTCATTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCACAGAAATATGTATGGTCTGGCTATAGGGAACTTTTTGACATTGTTAGAGAAATGAAGTTGAAGTTACAGGTTGTTATGGCTTTTCATGAATATGGAGGGGATGATTCTAGTGATCCGTTGATTTCTCTCCCACAATGGATTTTGGAGATTGGAAAAGACAACCAGGATATCTTTTTCACAGATCGTGAAGGACGGAGGAATACTGAATGTCTTTCTTGGGGCATTGACAAAGAGAGAGTTCTGAAAGGAAGAACTGGAATTGAGGTCTATTTTGATTTCATGAGAAGCTTTCGGACAGAATTTAGTGACTTGTTTGAGGAAGGCCTCATTTCTGCTGTAGAAATTGGACTTGGGGCATCTGGGGAGCTGAAATATCCTTCTTTTTCAGAAAGGATGGGATGGAGGTACCCAGGTATTGGTGAGTTTCAGTGTTATGATAAATATCTGCTACAAAGCCTGCGCAGAGCAGCCAAATTACGTGGCCACTCTTTTTGGGCTAGAGGACCTGATAATGCTGGACAATACAATTCTATGCCTCATGAAACTGGTTTCTTTTGTGAACGGGGCGATTATGACAATTATTATGGTCGCTTCTTCTTGCATTGGTATGCCCAGTCATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAAGCCTGGCTTTTGAGGAAACAAGACTAATTGTCAAGATTCCTGCTGTATACTGGTGGTACAAGACTGCTAGTCACGCAGCAGAGCTGACAGCAGGATATCACAACCCTACGAACCAGGATGGATACTCTCCTGTTTTTGAGGTTCTGAAAAATCATGGTGTGACTATGAAGTTTGTCTGCTTAGGATTTCAGCTTTCTAGTCAGGAAGCTGACGAGACGTTGGCTGACCCAGAGTGCTTGACTTGGCAGGTATTGAACTCATCCTGGGATCGAGGGTTGATAGTAGCTGGAGAGAATGCAATACCATGTTATGAGAGAGAAGGGTTCAAGAGACTAGTTGATATAGCGAAGCCAAGAAATGATCCTGATCGCCACCACTTCTCATTTTTTGCATATCAACAACCTTCCATGGTTCAGGGGAATATTTGCTTACCAGAGTTGGATCACTTCATCAAATGCATGCACGTAGGAGGAGGGGGCAGGGTTCGAATCCTGGACATGGGGGAGGGAAGTCAAGCTCCTATGCCACTGCGCTACTAA 2049 0.4627 MNSINDDNSRQDLDPQSDHSSDYLAHSLPLQPQPQTHPQPRRPRGFAATAAAAATITPNSAGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEADGTTYRQCPPPSQMASFAARSVETPLSAGSLRACTAKETLENQPPVLRIDESLSPASIDSVVIAERDSKNEKYPSANPINPVDCLEADQLMQDIHSGVHENNFTGTPYVPVYIKLPAGIINKFCQLIDREGIRQELIHMKSLNFDGVIVDCWWGIVEGWSPQKYVWSGYRELFDIVREMKLKLQVVMAFHEYGGDDSSDPLISLPQWILEIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDFMRSFRTEFSDLFEEGLISAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLLQSLRRAAKLRGHSFWARGPDNAGQYNSMPHETGFFCERGDYDNYYGRFFLHWYAQSLIDHADNVLSLASLAFEETRLIVKIPAVYWWYKTASHAAELTAGYHNPTNQDGYSPVFEVLKNHGVTMKFVCLGFQLSSQEADETLADPECLTWQVLNSSWDRGLIVAGENAIPCYEREGFKRLVDIAKPRNDPDRHHFSFFAYQQPSMVQGNICLPELDHFIKCMHVGGGGRVRILDMGEGSQAPMPLRY 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01620 682 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 169 659 IPR001554 GO:0000272|GO:0016161
Accr10g01620 682 MobiDBLite consensus disorder prediction 1 79 - -
Accr10g01620 682 MobiDBLite consensus disorder prediction 62 79 - -
Accr10g01620 682 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 288 306 IPR001554 GO:0000272|GO:0016161
Accr10g01620 682 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 476 495 IPR001554 GO:0000272|GO:0016161
Accr10g01620 682 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 583 605 IPR001554 GO:0000272|GO:0016161
Accr10g01620 682 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 545 568 IPR001554 GO:0000272|GO:0016161
Accr10g01620 682 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 310 331 IPR001554 GO:0000272|GO:0016161
Accr10g01620 682 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 267 281 IPR001554 GO:0000272|GO:0016161
Accr10g01620 682 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 403 425 IPR001554 GO:0000272|GO:0016161
Accr10g01620 682 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 527 538 IPR001554 GO:0000272|GO:0016161
Accr10g01620 682 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 510 526 IPR001554 GO:0000272|GO:0016161
Accr10g01620 682 Pfam Glycosyl hydrolase family 14 249 636 IPR001554 GO:0000272|GO:0016161
Accr10g01620 682 Pfam BES1/BZR1 plant transcription factor, N-terminal 62 207 IPR008540 -
Accr10g01620 682 Gene3D Glycosidases 223 666 - -
Accr10g01620 682 SUPERFAMILY (Trans)glycosidases 227 659 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01620 Accr-Chr10 40054149 40060807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01620 35 658 Glycoside Hydrolase AT5G45300 67.334 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Accr10g01620 Glyco_hydro_14 4.4e-83 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01620 K01177 - gmx:100777004 1146.34