LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr10g01619	ATGAATAGCATCAACGACGACAATTCCAGACAAGACCTCGACCCTCAAAGTGACCACAGTTCCGACTATTTAGCTCACTCTCTTCCTCTCCAGCCCCAGCCTCAGACCCATCCGCAGCCTCGCCGCCCTCGTGGCTTTGCGGCCACCGCGGCGGCGGCAGCTACCATCACCCCCAATTCCGCTGGAAAGGGCAAGAAAGAGAGAGAAAAAGAGAAGGAGCGCACCAAGCTCAGAGAGCGTCACCGTCGAGCAATCACTAGCCGTATGCTCGCCGGCCTCCGTCAGTATGGTAATTTCCCTCTCCCGGCTCGTGCGGACATGAATGATGTGCTTGCTGCGCTCGCCCGCGAGGCTGGTTGGGTTGTTGAGGCAGATGGCACCACCTACCGTCAGTGCCCACCTCCTTCGCAAATGGCATCATTTGCTGCAAGGTCAGTTGAAACTCCACTCTCTGCAGGTTCTTTAAGAGCTTGCACTGCTAAAGAAACACTGGAGAATCAACCACCAGTACTTAGAATTGATGAAAGCTTGTCACCTGCGTCCATTGATTCTGTTGTAATTGCAGAGAGGGATTCAAAGAATGAGAAATATCCAAGTGCAAACCCTATCAATCCAGTCGACTGCCTGGAGGCTGATCAGCTTATGCAGGATATTCATTCTGGGGTGCATGAGAATAACTTCACGGGCACACCTTATGTTCCTGTTTATATAAAACTTCCAGCTGGTATTATTAATAAATTTTGCCAGTTGATTGATCGTGAAGGAATTAGACAGGAGCTAATTCACATGAAGTCTTTAAATTTTGATGGCGTCATTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCACAGAAATATGTATGGTCTGGCTATAGGGAACTTTTTGACATTGTTAGAGAAATGAAGTTGAAGTTACAGGTTGTTATGGCTTTTCATGAATATGGAGGGGATGATTCTAGTGATCCGTTGATTTCTCTCCCACAATGGATTTTGGAGATTGGAAAAGACAACCAGGATATCTTTTTCACAGATCGTGAAGGACGGAGGAATACTGAATGTCTTTCTTGGGGCATTGACAAAGAGAGAGTTCTGAAAGGAAGAACTGGAATTGAGGTCTATTTTGATTTCATGAGAAGCTTTCGGACAGAATTTAGTGACTTGTTTGAGGAAGGCCTCATTTCTGCTGTAGAAATTGGACTTGGGGCATCTGGGGAGCTGAAATATCCTTCTTTTTCAGAAAGGATGGGATGGAGGTACCCAGGTATTGGTGAGTTTCAGTGTTATGATAAATATCTGCTACAAAGCCTGCGCAGAGCAGCCAAATTACGTGGCCACTCTTTTTGGGCTAGAGGACCTGATAATGCTGGACAATACAATTCTATGCCTCATGAAACTGGTTTCTTTTGTGAACGGGGCGATTATGACAATTATTATGGTCGCTTCTTCTTGCATTGGTATGCCCAGTCATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAAGCCTGGCTTTTGAGGAAACAAGACTAATTGTCAAGATTCCTGCTGTATACTGGTGGTACAAGACTGCTAGTCACGCAGCAGAGCTGACAGCAGGATATCACAACCCTACGAACCAGGATGGATACTCTCCTGTTTTTGAGGTTCTGAAAAATCATGGTGTGACTATGAAGTTTGTCTGCTTAGGATTTCAGCTTTCTAGTCAGGAAGCTGACGAGACGTTGGCTGACCCAGAGTGCTTGACTTGGCAGGTTGGTGTCATTTTCTTCTGCCAGGTATTGAACTCATCCTGGGATCGAGGGTTGATAGTAGCTGGAGAGAATGCAATACCATGTTATGAGAGAGAAGGGTTCAAGAGACTAGTTGATATAGCGAAGCCAAGAAATGATCCTGATCGCCACCACTTCTCATTTTTTGCATATCAACAACCTTCCATGGTTCAGGGGAATATTTGCTTACCAGAGTTGGATCACTTCATCAAATGCATGCACGTAGGAGGAGGGGGCAGGGTTCGAATCCTGGACATGGGGGAGGGAAGTCAAGCTCCTATGCCACTGCGCTACTAA	2073	0.4626	MNSINDDNSRQDLDPQSDHSSDYLAHSLPLQPQPQTHPQPRRPRGFAATAAAAATITPNSAGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEADGTTYRQCPPPSQMASFAARSVETPLSAGSLRACTAKETLENQPPVLRIDESLSPASIDSVVIAERDSKNEKYPSANPINPVDCLEADQLMQDIHSGVHENNFTGTPYVPVYIKLPAGIINKFCQLIDREGIRQELIHMKSLNFDGVIVDCWWGIVEGWSPQKYVWSGYRELFDIVREMKLKLQVVMAFHEYGGDDSSDPLISLPQWILEIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDFMRSFRTEFSDLFEEGLISAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLLQSLRRAAKLRGHSFWARGPDNAGQYNSMPHETGFFCERGDYDNYYGRFFLHWYAQSLIDHADNVLSLASLAFEETRLIVKIPAVYWWYKTASHAAELTAGYHNPTNQDGYSPVFEVLKNHGVTMKFVCLGFQLSSQEADETLADPECLTWQVGVIFFCQVLNSSWDRGLIVAGENAIPCYEREGFKRLVDIAKPRNDPDRHHFSFFAYQQPSMVQGNICLPELDHFIKCMHVGGGGRVRILDMGEGSQAPMPLRY	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr10g01619	690	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	267	281	IPR001554	GO:0000272\|GO:0016161
	Accr10g01619	690	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	476	495	IPR001554	GO:0000272\|GO:0016161
	Accr10g01619	690	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	527	538	IPR001554	GO:0000272\|GO:0016161
	Accr10g01619	690	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	310	331	IPR001554	GO:0000272\|GO:0016161
	Accr10g01619	690	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	403	425	IPR001554	GO:0000272\|GO:0016161
	Accr10g01619	690	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	510	526	IPR001554	GO:0000272\|GO:0016161
	Accr10g01619	690	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	288	306	IPR001554	GO:0000272\|GO:0016161
	Accr10g01619	690	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	545	568	IPR001554	GO:0000272\|GO:0016161
	Accr10g01619	690	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	169	667	IPR001554	GO:0000272\|GO:0016161
	Accr10g01619	690	MobiDBLite	consensus disorder prediction	1	79	-	-
	Accr10g01619	690	Gene3D	Glycosidases	223	674	-	-
	Accr10g01619	690	Pfam	BES1/BZR1 plant transcription factor, N-terminal	62	207	IPR008540	-
	Accr10g01619	690	MobiDBLite	consensus disorder prediction	62	79	-	-
	Accr10g01619	690	SUPERFAMILY	(Trans)glycosidases	227	667	IPR017853	-
	Accr10g01619	690	Pfam	Glycosyl hydrolase family 14	249	644	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr10g01619	Accr-Chr10	40054149	40060807	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr10g01619	35	666	Glycoside Hydrolase	AT5G45300	66.514	0.0	868

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BES1	Accr10g01619		Glyco_hydro_14	4.8e-80	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr10g01619	K01177		-	gmx:100777004	1139.02