Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01617 ATGGGATCCAGTAGTAGCAAAGCCACTTCCTCTTGCAATTCGTCGTCGTCTTCCGGCAGTTTCCGGAAGGTTCGATCTAACAAAGGGCATAGAGGATTTCAGTCGTCTTGTCTGGGAACTACCTCTGGATCTCATGACGAACAGAATAAAGTAAATGGCAGTGGTGTCACACACAGCTGTTGCACTGTGACACGATCAAATGAGATGAAATCAAAGTCTTTTAGAGATGATAAAAAGAAAATATCTGATGACATGCCTTGCATGCCTTCCAACATTGACCTTAATGAGTGGGCTCAAACAAGCATCTCCAGTAATTCCTCCAGAACTCGTAGCCGATCTGCTCGTACTTCTTCAACTGGTAGTCGATTTCTTTCTCATTTTAGCTTTATTCCTGGTAATATAAGCTTCAGACTTGGCAGAACCACCAGTTTAGGGTCATCAAGGTCTTGCCATGTTTCTTCTACAACAATGTCAATATTCGATAATGAAGATGATCTTAGTCTGCATCCAGGACCCACTGGCAGCTTGGTTGATAGAAATGAAACTCAACAATCATCAGATTCATCTGGTAACTTGCGGAGTAATCCCTCAGTTTCTTCTATACAGAATGTGGGTAGAGATGGAAATGGTTCTTGTGAAGGGCTGGATATAAACTCCTTTCCTCCAAGAATTCATTCTGAGACTGAAAATGTTGAGGGTCGACAAAACGGAGCTCGAGAACATGTTGAACGGAATTTTCGGTATAGCCGGACTCTAAGTGTTGGGAGGCTTCGTAATAGAGTTCTTCGTCAATCAACTTTATCTGACGTCAGCTTTTGCCCCCAGCAACAAGAGAGAGAAGCAAGGGATGCTAGGGAGGATAATGAAAGACAAGCCAGGGAGGGAGATTCAAGAGTATTACCATCTTTTAGTAATGCTATAAATTCTTCTTCTATTTCTGGTTATCCTCCATCCAGTATGTCTAGCTCCTTATTCAACATCCAAGACTATGAGGTTGAGAATTCGCGGTCAAGAGAAGCTAGGTACCAAGACCTGTTGGAACACAGATCCAACTTCCTTGAACGGAGAAGAAGGATAAGATCCCAGGTTCGTGCTCTTCAGCGATTGGGTAGCCGATTTGAAAATCTATCTGGACATGACAGATCTTGTATCTTGTCTGGTCAGCACAGAAATGGTCATTGTACATGCCGAATTGGCAGTCGTGATACTAGTTCAATTGATGATACCGGTACAAGAGCTAGCATATCAAGAATTGTAATGCTAGCTGAAGCCTTATTTGAGGTTCTCGATGAAATTCACCAGCAATCTGCGGTTTTATCTTCACGCCCTTCTGTGTCTTCCATTGGATCTGTTCCTGCACCTAATGATGTAGTGGAGTCTTTGCCGGTCAGACTATACACAAAGTTGCATAAACATCAGGAGGATGCTGCCCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGTGAGCTGCCTTGCTATCACCAATTTCATAGAACATGCATAGATAAGTGGCTTAAGGAAATTCACAGGGTATGTCCACTATGTCGGAGGGACATCTGCATATCTGATTCACTGTCAATGGAGAACTAA 1605 0.4305 MGSSSSKATSSCNSSSSSGSFRKVRSNKGHRGFQSSCLGTTSGSHDEQNKVNGSGVTHSCCTVTRSNEMKSKSFRDDKKKISDDMPCMPSNIDLNEWAQTSISSNSSRTRSRSARTSSTGSRFLSHFSFIPGNISFRLGRTTSLGSSRSCHVSSTTMSIFDNEDDLSLHPGPTGSLVDRNETQQSSDSSGNLRSNPSVSSIQNVGRDGNGSCEGLDINSFPPRIHSETENVEGRQNGAREHVERNFRYSRTLSVGRLRNRVLRQSTLSDVSFCPQQQEREARDAREDNERQAREGDSRVLPSFSNAINSSSISGYPPSSMSSSLFNIQDYEVENSRSREARYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRIGSRDTSSIDDTGTRASISRIVMLAEALFEVLDEIHQQSAVLSSRPSVSSIGSVPAPNDVVESLPVRLYTKLHKHQEDAAQCYICLVEYEDGDSMRELPCYHQFHRTCIDKWLKEIHRVCPLCRRDICISDSLSMEN 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01617 534 MobiDBLite consensus disorder prediction 272 319 - -
Accr10g01617 534 SMART ring_2 479 520 IPR001841 -
Accr10g01617 534 MobiDBLite consensus disorder prediction 276 296 - -
Accr10g01617 534 MobiDBLite consensus disorder prediction 71 96 - -
Accr10g01617 534 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 533 - -
Accr10g01617 534 SUPERFAMILY RING/U-box 457 527 - -
Accr10g01617 534 MobiDBLite consensus disorder prediction 162 238 - -
Accr10g01617 534 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Accr10g01617 534 MobiDBLite consensus disorder prediction 1 58 - -
Accr10g01617 534 MobiDBLite consensus disorder prediction 176 207 - -
Accr10g01617 534 MobiDBLite consensus disorder prediction 30 58 - -
Accr10g01617 534 Pfam Ring finger domain 478 521 IPR001841 -
Accr10g01617 534 MobiDBLite consensus disorder prediction 1 23 - -
Accr10g01617 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 442 526 IPR013083 -
Accr10g01617 534 FunFam Putative RING zinc finger domain superfamily protein 448 526 - -
Accr10g01617 534 MobiDBLite consensus disorder prediction 301 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01617 Accr-Chr10 40036389 40041231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01617 72 528 C3H Transcription Factor Family AT5G45290 49.894 6.58e-116 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01617 - - gmx:100815830 658.292