LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr10g01599	ATGGGCGTTTGTCTGATGAAATGGCAATGGCCATGGCTTCTTTATGTTCTGCTGATATGTCATGTAATCAATAGGAATGAAGCAATCAGTCCTGATGGAGAGGCACTTCTTAACTTCAGGACAGCAGTTAGCCCCAATAGTGACCTGTTACCTTGGAGGCCTGAGGATCCTGACCCATGCAAATGGAAAGGAGTAAAATGTGATCCCAAAACCAAGAGAGTGACAAATCTGTTTCTGGATCACCTCAAATTAAGTGGGTCTATTTCAGCTGACCTTGGGAAGCTTGAGCATCTCAGGATTCTTGCTCTTAACAACAACAACTTATATGGGACTATTCCATCAGAACTAGGAAATTGCACTGAATTGCAAGAAATATATTTGCACAGTAACTACCTTAGTGGAGTGATCCCAAGTGAAATCGGAAATCTTTCACAACTTCAAAATTTGGATATATCAAGTAACTCCCTCAGTGGGAGTATTCCCCCATCACTTGGGAAATTATATAGTCTAAAAAATTTCAATGCCTCGTTCAATTTTCTGGTTGGACCAATACCTTTGGATGGTGTGCTTGCCAACTACAATGAAAGCTCCTTCCTCGGAAATCTTGGTTTGTGTGGAGTGCAAATCAGTTCAACATGTAAGAATGATGGTTCCCCTAAATCCAATTCTCAATCTTCAATTTCAGACCTAAATGGAAAGAGGAAAGATTCTGGCCGGCTGCTTATTAGTGCATCAGCAACTGTGGGTGCACTACTTTTGGTGGCTCTTATGTGCTTCTGGGGTTGTTTTCTTTATAAGAAGTTTGGTAAAAATCACCGAGAAAGTTTAGCAATGGATGTCTGTGGAGGGGCATCCATTGTTATGTTTCATGGAGATCTACCATATTCTTCAAAGGATATTATTAAAAAACTTGAGACTTTAAATGAGGAACACATAATTGGTTGTGGAGGATTTGGAAAAGTTTACAGGCTTGCAATGGATGATGGGAATGTATTTGCTTTGAAAAGGATTGTAAAGTTAAATGATGGCTTTGATCGATTTTTTGAGAGAGAGCTTGAAATTCTTGGAAGCATTAAACACAGATATCTTTTGAACTTAAGAGGATATTGCAATTCACCTTCATCAAAGTTGTTAATATATGATTACCTACCTGGTGGTTGTCTTGATGAAGCTCTTCATGAAAGATCTGAGCAACTTGATTGGGATTCACGCTTGAATATCATCTTGGGAGCTGCAAAAGGGCTTGCCTACTTGCACCATGATTGTTCCCCCAGGATCATACACCGTGACATAAAATCAAGCAATATTTTGCTTGATGGAAACTTGGATGCTCGAGTCTCTGACTTTGGACTTGCCAAACTTCTGGAGGATGAGGAATCTCACATCACTACCATTGTTGCTGGAACATTTGGTTATCTAGCTCCAGAATATATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTTTATAGTTTTGGTGTCTTGGTACTTGAAGTGTTGAGTGGAAAGCGGCCAACAGATGCATCATTCATTGAGAAGGGCCTCAATATTGTCGGTTGGTTAAATCATTTAATTACGGAAAACAGAGCCAGAGATTTAGTTGACCAGCAGTGTGAAGGAGTGCGGGTAGAGAGCCTGGATGCGTTGCTCTCTGTAGCTATACAGTGCGTATCCTCAAGTCCGGAGGATCGACCCACAATGCACAGAGTGGTCCAATTGATTGAATCAGAGGTGATGACCCCTTGCCCAAGTGACTTTTATGACTCCAACTCCGAATAG	1779	0.4087	MGVCLMKWQWPWLLYVLLICHVINRNEAISPDGEALLNFRTAVSPNSDLLPWRPEDPDPCKWKGVKCDPKTKRVTNLFLDHLKLSGSISADLGKLEHLRILALNNNNLYGTIPSELGNCTELQEIYLHSNYLSGVIPSEIGNLSQLQNLDISSNSLSGSIPPSLGKLYSLKNFNASFNFLVGPIPLDGVLANYNESSFLGNLGLCGVQISSTCKNDGSPKSNSQSSISDLNGKRKDSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNHRESLAMDVCGGASIVMFHGDLPYSSKDIIKKLETLNEEHIIGCGGFGKVYRLAMDDGNVFALKRIVKLNDGFDRFFERELEILGSIKHRYLLNLRGYCNSPSSKLLIYDYLPGGCLDEALHERSEQLDWDSRLNIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNHLITENRARDLVDQQCEGVRVESLDALLSVAIQCVSSSPEDRPTMHRVVQLIESEVMTPCPSDFYDSNSE	592

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr10g01599	592	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	383	585	-	-
	Accr10g01599	592	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	74	575	-	-
	Accr10g01599	592	ProSiteProfiles	Protein kinase domain profile.	307	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr10g01599	592	SUPERFAMILY	L domain-like	42	195	-	-
	Accr10g01599	592	SMART	serkin_6	307	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr10g01599	592	Gene3D	Ribonuclease Inhibitor	30	214	IPR032675	-
	Accr10g01599	592	Pfam	Protein kinase domain	309	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr10g01599	592	ProSitePatterns	Protein kinases ATP-binding region signature.	313	339	IPR017441	GO:0005524
	Accr10g01599	592	FunFam	LRR receptor-like serine/threonine-protein kinase FEI 1	281	382	-	-
	Accr10g01599	592	Gene3D	Phosphorylase Kinase; domain 1	283	382	-	-
	Accr10g01599	592	MobiDBLite	consensus disorder prediction	213	233	-	-
	Accr10g01599	592	Gene3D	Transferase(Phosphotransferase) domain 1	383	581	-	-
	Accr10g01599	592	MobiDBLite	consensus disorder prediction	213	231	-	-
	Accr10g01599	592	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	426	438	IPR008271	GO:0004672\|GO:0006468
	Accr10g01599	592	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	29	190	-	-
	Accr10g01599	592	SUPERFAMILY	Protein kinase-like (PK-like)	292	574	IPR011009	-
	Accr10g01599	592	Pfam	Leucine rich repeat	97	156	IPR001611	GO:0005515
	Accr10g01599	592	Pfam	Leucine rich repeat N-terminal domain	31	68	IPR013210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr10g01599	Accr-Chr10	39911364	39917673	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr10g01599	1	583	Receptor kinase-like Gene Family	AT2G35620	73.801	0.0	853

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XIIIa	Accr10g01599		Pkinase	1.2e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr10g01599	-		-	gmx:100819230	1010.36